PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_13301.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 341aa    MW: 38297.3 Da    PI: 6.7986
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_13301.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.71.5e-36261162101
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+y+++ed++++++isw+e+g++f+v++++efak++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++sF+
  Sme2.5_13301.1_g00001.1  26 FLTKTYQLIEDQSINDVISWNEDGSTFIVWNPTEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDSFR 102
                              9*****************************************************************99.........********* PP

                              XXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkk 101
                              +g+k ll +i+r+k
  Sme2.5_13301.1_g00001.1 103 RGEKGLLIDIHRRK 116
                              ************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.0E-3817110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-5622115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.26E-3423115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MTPQPIDRNR GDPTASEMPR SLPTPFLTKT YQLIEDQSIN DVISWNEDGS TFIVWNPTEF  60
AKDLLPKYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFANDS FRRGEKGLLI DIHRRKVVTP  120
IATPSAAVAI VAAPPPPPPP PAQPPLAVST TDSCEEQVGS STSSAGSTAE LLGENERLRL  180
ENLQLNKELN QMKQLCGNIY GMMSKYAQPA NNDNQSAESM KPLDLLRTER SVDESHIVKV  240
VGDGESQAEP DQLHARLFGF SIGMKRGREG EEVKAQDLRL QQPGTDQVFT IFGMKEIQDV  300
SLRNCTPAAK RLKEIRLQLH TKGQSQPKWK PTLDHFDIYP V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-221911523129Heat shock factor protein 1
5d5v_B2e-221911523129Heat shock factor protein 1
5d5v_D2e-221911523129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754429e-96HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067295.11e-148heat stress transcription factor B-2a
SwissprotQ9SCW46e-78HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A0V0I8D41e-145A0A0V0I8D4_SOLCH; Putative heat stress transcription factor B-2c-like
STRINGSolyc03g026020.2.11e-144(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-55heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]