PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_11773.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 360aa    MW: 40993 Da    PI: 6.3898
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_11773.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.91e-23187248159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              +dDg++WrKYGqK++  s++pr+Y+rCt++   +C++ k+v++ +++p+++ +tY g+H+++
  Sme2.5_11773.1_g00001.1 187 VDDGHAWRKYGQKQILHSTYPRHYFRCTHKydqKCQASKQVQKIQDNPQLFRTTYYGHHTCK 248
                              59***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-24173248IPR003657WRKY domain
PROSITE profilePS5081119.761182250IPR003657WRKY domain
SuperFamilySSF1182901.96E-23183248IPR003657WRKY domain
SMARTSM007747.9E-34187249IPR003657WRKY domain
PfamPF031063.3E-22188248IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
IRCNRMGLEV ILNWEIALTR KRDVGSLTPH VHVMYRRHGQ VESSGVMLCN DHRLGRDNLF  60
TDEEISSAFP VIAHLVLLML VKDIDMENSS SDLNRAIAGL IRGREFTQQL KEIIKKPRGE  120
VANVMAEGLV AKIMDSFSET LSVINNSDEA KSPEDYSSAS CKSSDRRGCY KRRKTSESNI  180
KETSDLVDDG HAWRKYGQKQ ILHSTYPRHY FRCTHKYDQK CQASKQVQKI QDNPQLFRTT  240
YYGHHTCKAF PRVSQIILDS PLDGNPNYIS FDQNPTTFPS IKQEEVFSFY PKIEDQIQSS  300
SSDYLLPNDH DHLTFEASCG HMQSPDVMSS GVSTTTTTSN DNLEIGIDFE ECLWNFEGCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-22187248869OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0569181e-169EU056918.1 Solanum tuberosum WRKY transcription factor 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275414.11e-166WRKY transcription factor 6
TrEMBLA7UGD31e-165A7UGD3_SOLTU; WRKY transcription factor 6
TrEMBLM1CUN11e-165M1CUN1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000750911e-165(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-36WRKY DNA-binding protein 70