PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_11445.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 538aa    MW: 61113.4 Da    PI: 8.8246
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_11445.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00093473495123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp C+++F++   L  H r+H
  Sme2.5_11445.1_g00004.1 473 HECPFCNRMFKSGQALGGHKRSH 495
                              78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.099936IPR007087Zinc finger, C2H2
SMARTSM003550.7931IPR015880Zinc finger, C2H2-like
PfamPF139120.00151131IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.47196123IPR007087Zinc finger, C2H2
SMARTSM003550.07596118IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.28E-697118No hitNo description
PfamPF139121.7E-798120IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SuperFamilySSF576671.28E-6387411No hitNo description
PfamPF139121.1E-6392411IPR007087Zinc finger, C2H2
SMARTSM00355230392412IPR015880Zinc finger, C2H2-like
PfamPF139126.5E-9473495IPR007087Zinc finger, C2H2
SMARTSM003550.028473495IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452473495IPR007087Zinc finger, C2H2
PROSITE patternPS000280475495IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MEEDQDLKYF CKLCDKRYPC GKSFGGHMRS HVLAKEKVEF KQKKLQCWID GGKNNSKRDH  60
KSQFELNEHT GYGLRDNPKK TWRASDSRSL LLPQENVCQQ CGKVFQSLKA LCGHMACHSG  120
KNRGGSKDDY SWSSESKNLL MDSNSDTEAE EPKLRSRSNT KRYNRLVAKS SSFCLVNNRS  180
VSSSISEFDE QDQEEVAKCL MMLSMDSRVW NGVNSVVESS DNNFVVLETK SSSVDMKVAR  240
KDCLKPADNL DETHPRCKEN ADRNLKLNAL IAEAQAENSD SGYFLGEYAK VESDASVDEF  300
HRNGNYQWNT CDETRRDVEK GLNRTTTKYI TEMRNVSTKE YKYDSYGMAS KLVKSESRKR  360
TKDISCEPEL GNESSFRKIK LGFKGPEKKK KYECFNCKKT FSSYQALGGH RPCNKKANAY  420
FESTYETNEN GRNADNGPSY IDKGKTFSNR KPAAQDVNYN PEKKMKPKKF EGHECPFCNR  480
MFKSGQALGG HKRSHFLVGS QENHNQASAI KGEFVGLLDL NLPAPVTDVN GDPAFARW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072858.10.0uncharacterized protein LOC107017095
TrEMBLA0A3Q7FX160.0A0A3Q7FX16_SOLLC; Uncharacterized protein
STRINGSolyc04g005440.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-47C2H2-like zinc finger protein