PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_11242.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 26181 Da PI: 9.3617 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.8 | 2.4e-17 | 102 | 152 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr++ +g ++AeIrdp + k +r++lg++ t+e+Aa a+++a+ kl+g Sme2.5_11242.1_g00001.1 102 RYIGVRRRQ-WGTFAAEIRDP---NrKGARVWLGTYETPEDAAVAYDEAAFKLRG 152 699***887.**********9...6566*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-30 | 102 | 161 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-11 | 102 | 152 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.63E-28 | 102 | 162 | No hit | No description |
SMART | SM00380 | 8.7E-34 | 102 | 166 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.919 | 102 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 102 | 161 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.0E-10 | 103 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 142 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MNNPVHDDET FSSDFDVLES IKHHLLNDSD FSAFFSSMSY SSNVELPNSP TSIFGSVDNT 60 SLLETTPTKD HVVESRDKFD SKDQTRGLEV VRDEHAPQEW RRYIGVRRRQ WGTFAAEIRD 120 PNRKGARVWL GTYETPEDAA VAYDEAAFKL RGSKARLNFP HLAGSNISKP ARVKGSRRPH 180 SSGSSSSSYS STLSENGARK RKIDVINSIA RAKLVCHSLI KFTDVGVAMN KERS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-25 | 103 | 160 | 6 | 63 | ATERF1 |
3gcc_A | 8e-25 | 103 | 160 | 6 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348007.1 | 1e-100 | PREDICTED: ethylene-responsive transcription factor 13-like | ||||
TrEMBL | M1CGJ7 | 6e-99 | M1CGJ7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400067018 | 1e-99 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 1e-37 | ethylene-responsive element binding factor 13 |