PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_10740.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HSF | ||||||||
Protein Properties | Length: 111aa MW: 12190.4 Da PI: 8.4577 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 54 | 4.6e-17 | 31 | 78 | 2 | 49 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT-- CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsn 49 Fl+k+y++++d+++++++sws nsfv++d+ efak++LpkyFkh+ Sme2.5_10740.1_g00006.1 31 FLMKTYDMVDDPSTDKIVSWSPADNSFVIWDPPEFAKELLPKYFKHTL 78 9********************999**********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.3E-19 | 25 | 79 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.56E-17 | 26 | 78 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.9E-13 | 27 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-9 | 31 | 54 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.4E-14 | 31 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-9 | 69 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MGSAIMEAGA GSPVPEPKPT PMPCSNAPPP FLMKTYDMVD DPSTDKIVSW SPADNSFVIW 60 DPPEFAKELL PKYFKHTLFL FVLLLIGNGK LYGVNVVIGN VGDRKLKLKL K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-16 | 1 | 98 | 3 | 93 | Heat shock factor protein 1 |
5d5v_B | 2e-16 | 1 | 98 | 3 | 93 | Heat shock factor protein 1 |
5d5v_D | 2e-16 | 1 | 98 | 3 | 93 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:7948881}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006352886.1 | 2e-36 | PREDICTED: heat shock factor protein HSF8 | ||||
Refseq | XP_006352887.1 | 2e-36 | PREDICTED: heat shock factor protein HSF8 | ||||
Refseq | XP_006352888.1 | 2e-36 | PREDICTED: heat shock factor protein HSF8 | ||||
Swissprot | P41151 | 6e-26 | HFA1A_ARATH; Heat stress transcription factor A-1a | ||||
TrEMBL | M1B6S4 | 4e-35 | M1B6S4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400038381 | 7e-36 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA572 | 24 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17750.1 | 2e-28 | heat shock factor 1 |
Publications ? help Back to Top | |||
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