PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_10386.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 258aa    MW: 28896.6 Da    PI: 6.5502
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_10386.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.1e-2084134155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              ++y+GVr ++ +gr++AeIrdp     + +r++lg+f+tae+Aa+a++ a+++l+g
  Sme2.5_10386.1_g00004.1  84 PRYRGVRKRP-WGRFAAEIRDPI----KkTRVWLGTFDTAEDAARAYDDAARALRG 134
                              68********.**********72....35*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.99E-2084144No hitNo description
PfamPF008471.1E-1384134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3285142IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-2285143IPR016177DNA-binding domain
PROSITE profilePS5103223.32785142IPR001471AP2/ERF domain
SMARTSM003802.0E-3885148IPR001471AP2/ERF domain
PRINTSPR003672.8E-118697IPR001471AP2/ERF domain
PRINTSPR003672.8E-11108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MNLGRRRALN RESEYFLYPA KDLTDFFWVP DKLVLYPARE MPKISIESET FINGQEDPKK  60
AEKIIHALLK PGSDLLKQPE ADPPRYRGVR KRPWGRFAAE IRDPIKKTRV WLGTFDTAED  120
AARAYDDAAR ALRGPKAKTN FNILPVTQDP YDGANQFELF PNSRPASSSM SSTLESSSGP  180
RGGSGNKLTR MKIPRPVLPP EDCRSDCDSS SSVVDDRYDV DQTSFLTKQP LPFDLNLPPP  240
SDNAGVDVDD LHVTALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-20811411071Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016501349.11e-86PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9LDE43e-33ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A1S4CKA72e-85A0A1S4CKA7_TOBAC; ethylene-responsive transcription factor 3-like
STRINGXP_009630856.14e-84(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137791113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.17e-21ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]