PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09146.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 402aa    MW: 45068.6 Da    PI: 5.3627
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09146.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS154.21.2e-4711125573214
                     GRAS  73 nsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..ske 156
                              ns  +    k+f+e + +lkf+h+taNq Ilea++ ++rvH+iDf+++qG QW a+lqaLa Rp+gpp++R+Tg+g +  +  s++
  Sme2.5_09146.1_g00005.1 111 NSMVQ-LLSKIFYEDCFFLKFAHVTANQSILEAFADSKRVHVIDFSLNQGSQWSAFLQALALRPGGPPTFRLTGIGGHYRTdeSTD 195
                              22222.34478****************************************************************986665789** PP

                     GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrll 214
                               l+e+g++La++A+++gv+fef+ lv+++l+dle  +L++++   E++aVn+v++l  l+
  Sme2.5_09146.1_g00005.1 196 GLQEVGSKLAQLAQSVGVEFEFHGLVVHTLADLEAPMLNIRTsnVESVAVNSVFNLRCLF 255
                              **************************************9998889*********998776 PP
2GRAS912e-28265378257368
                     GRAS 257 flealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                              + ea +yys++fd l +++  + s  +  +  ++l++ei n+vaceg++r+ rhet+++Wr r+++aGF+ v+ +++++  a++ll
  Sme2.5_09146.1_g00005.1 265 IKEAWHYYSTMFDLLeNSEWTKRSTIDLEIVGQYLRQEIYNLVACEGTKRVVRHETFGQWRVRFNSAGFNMVTPGSNTYRLADMLL 350
                              5799***********6667777778888888899**************************************************** PP

                     GRAS 342 rkvk.sdgyrveeesgslvlgWkdrpLv 368
                              + +  ++ y+vee++ +l+l W+++pLv
  Sme2.5_09146.1_g00005.1 351 ASYTnGKSYSVEEKDRCLMLSWHSHPLV 378
                              ****9999******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.32223363IPR005202Transcription factor GRAS
PfamPF035144.1E-45111255IPR005202Transcription factor GRAS
PfamPF035146.8E-26265378IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
METIIEDEDS FVSNANAIIY AASDISGWTQ SLISDNNIPN SSSSTSIDEH HHHQQISTAA  60
GDDDSMIVSS SASCSSFNNE KKIDDQQEIR IFNVDFRALC HKTQKCCSTS NSMVQLLSKI  120
FYEDCFFLKF AHVTANQSIL EAFADSKRVH VIDFSLNQGS QWSAFLQALA LRPGGPPTFR  180
LTGIGGHYRT DESTDGLQEV GSKLAQLAQS VGVEFEFHGL VVHTLADLEA PMLNIRTSNV  240
ESVAVNSVFN LRCLFCIPGA IEKVIKEAWH YYSTMFDLLE NSEWTKRSTI DLEIVGQYLR  300
QEIYNLVACE GTKRVVRHET FGQWRVRFNS AGFNMVTPGS NTYRLADMLL ASYTNGKSYS  360
VEEKDRCLML SWHSHPLVEE KDGGLMLSWH NHPLITTSAW CC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-30119400100378Protein SCARECROW
5b3h_A2e-3011940099377Protein SCARECROW
5b3h_D2e-3011940099377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331231e-127AC233123.5 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-13b20 map 10, complete sequence.
GenBankAC2402031e-127AC240203.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-27f6 map 10, complete sequence.
GenBankHG9755221e-127HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249633.31e-149DELLA protein GAI
SwissprotQ7Y1B69e-93GAI_SOLLC; DELLA protein GAI
SwissprotQ84TQ74e-93GAI_GOSHI; DELLA protein GAI
TrEMBLA0A3Q7IN051e-141A0A3Q7IN05_SOLLC; Uncharacterized protein
STRINGSolyc10g086380.1.11e-148(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128641119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.14e-92GRAS family protein
Publications ? help Back to Top
  1. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]