PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07876.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WOX
Protein Properties Length: 360aa    MW: 40574.4 Da    PI: 9.6294
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07876.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.6e-1749109257
                              T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                              ++R+++ +eq+++Le+ F++   +p ++e++++ +kl    ++ +++V++WFqNr+ + k+
  Sme2.5_07876.1_g00002.1  49 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAKLqeygQVGDANVFYWFQNRKSRSKH 109
                              89*****************99*************************************995 PP
2Wus_type_Homeobox111.93.5e-3648111265
        Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                              +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++kq
  Sme2.5_07876.1_g00002.1  48 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAKLQEYGQVGDANVFYWFQNRKSRSKHKQ 111
                              689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.48E-1241115IPR009057Homeodomain-like
PROSITE profilePS5007110.38245110IPR001356Homeobox domain
SMARTSM003894.9E-947114IPR001356Homeobox domain
CDDcd000861.15E-748111No hitNo description
Gene3DG3DSA:1.10.10.601.7E-648114IPR009057Homeodomain-like
PfamPF000464.0E-1549109IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNSH HHQWQHDINS SLIQQRPPCN PEERSPEPKP RWNPRPEQIR  60
ILEAIFNSGM VNPPRDEIRK IRAKLQEYGQ VGDANVFYWF QNRKSRSKHK QRHLQAKSQQ  120
QQNNSSSSSS SDKSSPNSLT FSIGSSNVMD LLNSPTSSVN QQNYDEFLSN EQPFFFTVQP  180
PPAPIAQTHD HSAMTQGFCF PDSTTFSQSS SALFPSEWMG ISQAPNISKK VENEKMNLQS  240
QLMSYTVTST VSPPATTSTI PAISNIQGVA VDPIDVGPTR STVFINDVAF EVGSGPFNVR  300
EVFGEDAVLI HSSGEPLITN EWGLTIQPLQ HDLEELMLKK KWVANSSLLS LKKKRKTRRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338355KKKWVANSSLLSLKKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234072.10.0compound inflorescence
RefseqXP_010315847.10.0compound inflorescence isoform X1
TrEMBLA0A0V0I1D70.0A0A0V0I1D7_SOLCH; Putative WUSCHEL-related homeobox 9-like
STRINGSolyc02g077390.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59422335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45980.11e-64WUSCHEL related homeobox 8