PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07339.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 341aa    MW: 38360.1 Da    PI: 7.4648
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07339.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.83.8e-27135195259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dgy+WrKYGqK++ g+++pr+YYrCt++   gC ++k+v++s+ + +++e+tY+g+H ++
  Sme2.5_07339.1_g00001.1 135 EDGYSWRKYGQKDILGANHPRAYYRCTHRntqGCLATKQVQKSDGNSTMFEVTYKGRHSCK 195
                              7***************************98889*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.251129197IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-26129196IPR003657WRKY domain
SuperFamilySSF1182902.22E-24133195IPR003657WRKY domain
SMARTSM007746.8E-38134196IPR003657WRKY domain
PfamPF031063.8E-25135195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEKVRDLDKK KLMNELTQGK EFVKQLKRQI GPLASPQECD LLIGKILCTL EKSLSILNLK  60
ALLLEGGINN PNNSTSSSSS ISFPGNNSNN SPKREVLDSS RDQLSKSMVS KKRKKSQQWT  120
NQTSIFVNGV EGPQEDGYSW RKYGQKDILG ANHPRAYYRC THRNTQGCLA TKQVQKSDGN  180
STMFEVTYKG RHSCKAAQSE IFSLGNQKRH KHKTKQEQNM LIFNSEPNHK VENFNITTKE  240
EAFTPFPFSP TPLQLEETKF FSDSIAPFSS PIAPELSPYL SMLTSQNEEF GMMLQSSDSD  300
LTELISTPTS ISNSSFGGDC NLSEDFEPNL TFDIEEFLQL I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-18135195969OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110114KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU4545850.0GU454585.1 Solanum lycopersicum WRKY transcription factor (WRKY3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339686.11e-169PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A2R2Q2I91e-179A0A2R2Q2I9_LYCBA; WRKY transcription factor
STRINGPGSC0003DMT4000005991e-168(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.17e-34WRKY family protein