PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06423.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 273aa    MW: 29442.1 Da    PI: 4.8335
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06423.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY36.41.1e-11169190223
                              --SS-EEEEEEE--TT-SS-EE CS
                     WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                              +Dgy+WrKYGqK vk+s+fpr+
  Sme2.5_06423.1_g00002.1 169 EDGYRWRKYGQKAVKNSPFPRG 190
                              8*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-12153190IPR003657WRKY domain
SuperFamilySSF1182901.83E-9160190IPR003657WRKY domain
PROSITE profilePS5081113.551163201IPR003657WRKY domain
SMARTSM007745.0E-5168213IPR003657WRKY domain
PfamPF031061.6E-7169190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDDNKDKVDD PLLPGAEFPG AGAESSWSLG GDDESDNVYF FGTGSNRDTG ILTEFGWNFQ  60
PAGDRDGGGG FDRIEKDLAG NISTTNTPSV PESTSTATEP TTAAAGKITD EPVSSSCSDD  120
PPEKSTASGG SSASRPPSDT ASKVKKKGQK RIRQPRFAFM TKSEVDHLED GYRWRKYGQK  180
AVKNSPFPRG GLINHEAFTS QLTPLPSQFY HPSGVQYPHD QLVVPHAPES RTMPGETRPE  240
ARRLTETSQL DATQQPTDEG LLGDIVPPGM RNR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139331e-119BT013933.1 Lycopersicon esculentum clone 132931F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239067.11e-124probable WRKY transcription factor 57
RefseqXP_010320877.11e-124probable WRKY transcription factor 57
RefseqXP_025886861.11e-124probable WRKY transcription factor 57
TrEMBLA0A3Q7GFS31e-123A0A3Q7GFS3_SOLLC; Uncharacterized protein
STRINGSolyc05g012500.2.11e-124(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80312228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.28e-28WRKY DNA-binding protein 57