PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06347.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 206aa    MW: 23854.2 Da    PI: 8.3352
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06347.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.5e-18350148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg W +eEd++l+++v+ +G g+W+tI+++ g+ R++k+c++rw +yl
  Sme2.5_06347.1_g00004.1  3 RGFWKPEEDLILKNCVETHGEGNWATISEKSGLMRSGKSCRLRWKNYL 50
                             799*******************************************97 PP
2Myb_DNA-binding49.68.9e-1656101148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg ++++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Sme2.5_06347.1_g00004.1  56 RGMMSEDEKDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEVKNFWNTHL 101
                              6789******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.527154IPR017930Myb domain
SMARTSM007172.9E-14252IPR001005SANT/Myb domain
SuperFamilySSF466894.12E-28297IPR009057Homeodomain-like
PfamPF002492.4E-15350IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-21657IPR009057Homeodomain-like
CDDcd001673.21E-11650No hitNo description
SMARTSM007171.8E-1355103IPR001005SANT/Myb domain
PROSITE profilePS5129418.13255105IPR017930Myb domain
PfamPF002492.2E-1456101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2258104IPR009057Homeodomain-like
CDDcd001672.11E-1059101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MNRGFWKPEE DLILKNCVET HGEGNWATIS EKSGLMRSGK SCRLRWKNYL RPNIKRGMMS  60
EDEKDLIIRL HKLLGNRWSL IAGRIPGRTD NEVKNFWNTH LNNKRFCRGK KKHVKSKEAN  120
THTAQAKMQE YPAEAVSNQE VATKSALDSW IEEMQDFNCS LLSPLSMNNV PFLEDEPFIP  180
ILDDIVFLEA FTSTGKDVWN EVQPFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-22110425127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1220540.0AF122054.1 Solanum tuberosum clone 9 tuber-specific and sucrose-responsive element binding factor (TSF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275316.11e-144transcription factor MYB82-like
SwissprotQ9LTF75e-59MYB82_ARATH; Transcription factor MYB82
TrEMBLQ9FZ121e-142Q9FZ12_SOLTU; Tuber-specific and sucrose-responsive element binding factor
STRINGPGSC0003DMT4000794161e-143(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.12e-61myb domain protein 82