PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_06085.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 364aa MW: 41013.8 Da PI: 7.7667 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.9 | 3.2e-07 | 227 | 267 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+++ ++ L +llP++ kK++ a++Le+A +Y+k Lq Sme2.5_06085.1_g00003.1 227 RKRRQKLSEKTRCLEKLLPWD-----KKMDTATMLEEAYKYVKFLQ 267 9*******************9.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.639 | 217 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-5 | 223 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-10 | 224 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-9 | 226 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-4 | 227 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.44E-6 | 227 | 271 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MLCASAMERK LPLIMERKLP LIPPEFNAGE ALLPIMDSDE AFINSMYDGM SYQSLLSLSL 60 DHGSYGEVKP FLAHSSFHPS LVTDNMLCTS AASSQIKQSP ATSHDFSTGD HFAWLNKKEI 120 NPDAGQKMKC PKLEPVTDNL QLYPYNNNEV FLSEPFNRFS NTSSGYGYLS LPDLRCFEQP 180 NYLDFHYGDS SSIVPAENRV AEPVPPVSKV MSSLLKNRQP YSSSTTRKRR QKLSEKTRCL 240 EKLLPWDKKM DTATMLEEAY KYVKFLQAQI SVLQSMPPLV DGGAPSDQDR NRANEAKAVS 300 VFGTLAKLNR QQLLQVFLNS PVAQTYLYSE GCCVFSVEQL VQYRKIAQRN ALYRQSLFFS 360 GMLS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 225 | 230 | TRKRRQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006360553.1 | 0.0 | PREDICTED: transcription factor bHLH69 | ||||
TrEMBL | M1CH10 | 0.0 | M1CH10_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400067287 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11250 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22100.1 | 7e-26 | bHLH family protein |