PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05971.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 457aa    MW: 49726.9 Da    PI: 6.8646
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05971.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-20217266255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Sme2.5_05971.1_g00001.1 217 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 266
                              7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.3E-37217280IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22217275IPR016177DNA-binding domain
PROSITE profilePS5103225.712217274IPR001471AP2/ERF domain
CDDcd000184.47E-21217276No hitNo description
Gene3DG3DSA:3.30.730.109.7E-33217275IPR001471AP2/ERF domain
PfamPF008474.1E-14217266IPR001471AP2/ERF domain
PRINTSPR003671.3E-11218229IPR001471AP2/ERF domain
PRINTSPR003671.3E-11240256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MCLLKVANQK DSGEYDRIPS TAGDSETTTT EGIPQTYEQS QSFEEMLQQQ IQQEADYLMS  60
ASANPMYTGY TQSRDMSAMV TALTHVVSGR RQGEWGYRPE ISGGTTSFGG GGGGGGGGSG  120
SIYSANSPSS SSSGSWAGQK RRRDQEESVT GEQPQRVYGS FGEFRSGESS SSVKPEEGTS  180
QLTPQTTTTT TAATTASQTP AQPSEVASEE TGERKRRYRG VRQRPWGKWA AEIRDPHKAA  240
RVWLGTFDTA EAAARAYDEA ALRFRGNRAK LNFPENVRLL PQQQPQPKTR LAISSSSSSV  300
PQSRFQLMSA ATTPSPFFQS YNQPQYQHHH QQQQQQFFPS ADICRDYWEY SQLLQNPIDF  360
HGQQQSSSLL EQMLLASSLG VLHSHTFSSS SSSAFATAAA SSTSSPAYPL FYSAQQPGFF  420
QPQTHQNQGN SGGSSSSSSF PPPFWTSSAH YPPSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22216277163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363442.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLM1A7F40.0M1A7F4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000163060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-24ethylene response factor 110