PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_05447.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 168aa MW: 18879.1 Da PI: 10.0323 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 126 | 148 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k+F++ L H r+H Sme2.5_05447.1_g00006.1 126 HECSICHKTFPSGQALGGHKRRH 148 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.05E-7 | 71 | 94 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.2E-5 | 71 | 97 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 5.2E-8 | 72 | 97 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.3 | 72 | 99 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.074 | 72 | 94 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 74 | 94 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.05E-7 | 121 | 148 | No hit | No description |
Pfam | PF13912 | 1.1E-13 | 125 | 150 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.699 | 126 | 153 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.03 | 126 | 148 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 128 | 148 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MALEALNYST TPNHLESWTK CKMRSKRPRS IVTEEQQRPT ISKEEYLAFC LLMLARSTNN 60 NNNNDFSSKN SYKCSVCGKS FGCHQALGGH KASHSKQFPN GDKVSYEHSV TTTSATSSNG 120 VSGRTHECSI CHKTFPSGQA LGGHKRRHYE RKEHHRHRAV WGLPTTLT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 9e-39 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019245680.1 | 5e-61 | PREDICTED: zinc finger protein ZAT10-like | ||||
TrEMBL | A0A1J6IE76 | 1e-59 | A0A1J6IE76_NICAT; Zinc finger protein zat10 | ||||
STRING | PGSC0003DMT400030168 | 2e-58 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA735 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 4e-34 | C2H2 family protein |