PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_05447.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 239aa MW: 25853.8 Da PI: 8.7425 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00042 | 67 | 89 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+ksF ++ L H +H Sme2.5_05447.1_g00004.1 67 YKCSVCSKSFGSHQALGGHKASH 89 9************9999998887 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00022 | 155 | 177 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k+F++ L H r+H Sme2.5_05447.1_g00004.1 155 HECSICHKTFPSGQALGGHKRRH 177 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.45E-6 | 64 | 93 | No hit | No description |
SMART | SM00355 | 0.014 | 67 | 89 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.0E-11 | 67 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.51 | 67 | 94 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 69 | 89 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.0E-6 | 117 | 133 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.04E-6 | 152 | 182 | No hit | No description |
Pfam | PF13912 | 1.9E-13 | 154 | 179 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.889 | 155 | 182 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.03 | 155 | 177 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 157 | 177 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MTLQALNTTT QNHLESWTKC KMRSKRPRSI ITEEQQHPMI SEEEYLAFCL LMLARSTNND 60 FSSKNSYKCS VCSKSFGSHQ ALGGHKASHR KQFPNGDKVS YENSVSATSA NGVSGRTHEC 120 SICLKTFPSG QVLDKVSYEN SVSATSANGV SGRTHECSIC HKTFPSGQAL GGHKRRHYEG 180 KVTSSSSSSG GVGSANIFDL NIPALPEYWP GFGSGEDEVE SPHPAKKSRG FPSTGLVLS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC234112 | 2e-74 | AC234112.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 12 clone LE_HBa-95O18, complete sequence. | |||
GenBank | HG975524 | 2e-74 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006342662.1 | 4e-87 | PREDICTED: zinc finger protein ZAT10-like | ||||
TrEMBL | M1ATU2 | 9e-86 | M1ATU2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400030168 | 1e-86 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA735 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 1e-37 | salt tolerance zinc finger |