PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05423.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CPP
Protein Properties Length: 853aa    MW: 93194.2 Da    PI: 6.7339
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05423.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.11.1e-15655692340
                      TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                              +k+CnCkk+kClk+YC+Cfaag++C ++C+Ce+C+N+ 
  Sme2.5_05423.1_g00003.1 655 CKRCNCKKTKCLKLYCDCFAAGVYCVDSCTCEGCFNRP 692
                              79**********************************86 PP
2TCR49.96.3e-16740778139
                      TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                              ++k+gCnCkks ClkkYCeC++a++ Cs+ C+Ce+CkN 
  Sme2.5_05423.1_g00003.1 740 RHKRGCNCKKSMCLKKYCECYQANVGCSSGCRCEGCKNV 778
                              589***********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-15653694IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.298654780IPR005172CRC domain
PfamPF036381.8E-11656691IPR005172CRC domain
SMARTSM011146.9E-17740781IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.9E-11742777IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MSSSEAQFWK EAINSEIESI LNNHTPELPE STPENERFVV TEGWKHSDFL CKNYILSRLE  60
DDLYNVYRTA FSKTSPNCFT QVLREKKERQ SESFQRNSEI LEDSSFSANG LTLFPLFRLV  120
WLGGNRLEPW GLLSFKDSPV FNYISNLSPI QPVKGAPIVQ DFSGLNSPPL PFTSPRINAQ  180
NRSSFLRRWS QFPKLSIETF SGRNEDYNSA VTDSDGTGVS VSPLSSGLSP FVQKVSDNNI  240
SVPEQSGSPI RCVDEFLVDV SNSESGNPSN SNNSIPKVAD TIPQSPNSAE DSNVSVANIA  300
SKDERKDKIP EDAACVVVEQ AEEDNKGKSP SIQKDIGVYS TNTDLDLPPP ALCTKIFPGL  360
PAHSSSHYYY GDQHMGQLSR SDHPMLEEAS TISIKSLETA HDCRDDSDKI TTKSVATDES  420
IVQHGSQIKT GQHQSGISRR CLQFEDAQQK IAPASSNSQS ASSIVTCSIP PVTPAVVEIV  480
EPVSSNRSST ATNRPLTQLT SSSVNSEALT LKVPKPSGIG LHLNRIVNGM EAGSGATVRV  540
KSTERGNLSI QGKMLTSMIS CHPSKNLKNC LSSNVVGSNL TSGDNVGKHK SYVSNAESVA  600
ASSCLNDAKP LNETVLLKPT EHTPSHKRKF NSEHIDGRMN YNKKKTSDGN DGDGCKRCNC  660
KKTKCLKLYC DCFAAGVYCV DSCTCEGCFN RPDYEDTVLD VRHQIQSRNP LAFAPKIVQH  720
PTTSPANGED GASFTPSSAR HKRGCNCKKS MCLKKYCECY QANVGCSSGC RCEGCKNVYG  780
PKEVYLYPSV YLLKPTSRTS EQEHQYFFSA HAQTITVSLP SSYQPPAPPL ASRPNVMCDI  840
IIDIATILDD GPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-1965877814121Protein lin-54 homolog
5fd3_B6e-1965877814121Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159356.10.0PREDICTED: CRC domain-containing protein TSO1-like isoform X2
TrEMBLM1C4F70.0M1C4F7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000595710.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69802128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-60Tesmin/TSO1-like CXC domain-containing protein