PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05316.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 586aa    MW: 65194.6 Da    PI: 8.7128
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05316.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.7e-1757100448
                              S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              WT+eEd ll ++vk + g++Wk+Ia+++  gRt+ qc +rwqk+l
  Sme2.5_05316.1_g00005.1  57 WTEEEDNLLTEVVKSFKGRNWKRIAECLK-GRTDVQCLHRWQKVL 100
                              ****************************9.************986 PP
2Myb_DNA-binding568.8e-18106152148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              +g+WT+eEd+l++++v+++G + W+ Ia+ +  gR +kqc++rw+++l
  Sme2.5_05316.1_g00005.1 106 KGPWTKEEDDLIIELVEKYGYKKWSVIAKSLH-GRIGKQCRERWHNHL 152
                              79******************************.*************97 PP
3Myb_DNA-binding48.42.2e-15158202147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              r++W+++E+  l ++ + +G++ W++Iar ++ gR+++ +k++w++ 
  Sme2.5_05316.1_g00005.1 158 RDAWSEQEESVLCHYQQIYGNK-WAKIARFLP-GRSDNAIKNHWNST 202
                              789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.42547100IPR017930Myb domain
SMARTSM007171.0E-1353102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2456116IPR009057Homeodomain-like
SuperFamilySSF466898.61E-1556110IPR009057Homeodomain-like
PfamPF002491.0E-1457100IPR001005SANT/Myb domain
CDDcd001671.30E-1357100No hitNo description
PROSITE profilePS5129429.865101156IPR017930Myb domain
SuperFamilySSF466892.49E-31103199IPR009057Homeodomain-like
SMARTSM007172.8E-16105154IPR001005SANT/Myb domain
CDDcd001679.75E-16108152No hitNo description
PfamPF139219.6E-18109167No hitNo description
Gene3DG3DSA:1.10.10.605.7E-27117159IPR009057Homeodomain-like
SMARTSM007179.7E-15157205IPR001005SANT/Myb domain
PROSITE profilePS5129420.001157207IPR017930Myb domain
CDDcd001679.68E-11160203No hitNo description
Gene3DG3DSA:1.10.10.601.8E-20160206IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MIQVKEEAPT LDIGGFISCS SFSDSSYEAS TPRCSSEPSS SCQRSSGPTK RSSQAGWTEE  60
EDNLLTEVVK SFKGRNWKRI AECLKGRTDV QCLHRWQKVL NPELVKGPWT KEEDDLIIEL  120
VEKYGYKKWS VIAKSLHGRI GKQCRERWHN HLDPTIKRDA WSEQEESVLC HYQQIYGNKW  180
AKIARFLPGR SDNAIKNHWN STLKKRSNLN LLSKLALDIQ IEGSPDFSTP KKNPEIKKHP  240
ALAHNAETIF LSEQTGVDNA ADACSTDLRI GYACYPRNAL HKGTSLFGDC KSSEENVRDL  300
LKPLGGLQFG KAEILPIGGK DKQCQSNLSL TKMSYPLLAS PLDFPLDPSH STRKSSSQVE  360
AAHPTSFGRM YESPKRSRYD TVNDPDHDFL NLSLAGFTEV SQGNKKNKTC DTQSPLALKQ  420
PGRLYYEPPK LKDLIVPLTD ENLSRDNLIR QQNDHPLCST PPSLKLTVSA NGSSPESVLR  480
NSAMSYTKTP SIIRKKTSRF PEASGHYSCT GTTTPMHLLP SAPDREDTSN LKDKISGCKR  540
SVSGKSLGRR LEYAFDMEWD SSRCCTPVSA APPGGLTLGA NTMLTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-64572069158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-64572069158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371376ESPKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358883.10.0PREDICTED: transcription factor MYB28-like
RefseqXP_006358884.10.0PREDICTED: transcription factor MYB28-like
TrEMBLM0ZTQ20.0M0ZTQ2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000078990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103932025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.23e-74myb domain protein 3r-4