PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05282.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 680aa    MW: 75119.6 Da    PI: 8.4365
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05282.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.5e-08581630147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                              r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Sme2.5_05282.1_g00002.1 581 RRPFSVSEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 630
                              678999********************9776668**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.383576635IPR017930Myb domain
SMARTSM007175.3E-8580633IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-10581631IPR009057Homeodomain-like
CDDcd116603.25E-17582632No hitNo description
SuperFamilySSF466898.54E-16582663IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MVLHKRLDYG FNGYQVPHIP RATRSARGRG KIRKKFDGNE MCAFALLTSV AGKLLLEGES  60
TLKSSGKDRS AVVKDTTETI KEDEDTPLKE NPCNEGCLEQ GFFISPIVSE APVVNHCLSK  120
SADTLSGPAS VITSSDCSEK LGSAEQFING ENKIENGNCS TKAEQEVYGC GDFSSCIVGS  180
ESKKQVKIDL SNDARIPANK RAAICSSDFP DPWDRKHSTL PASDNIVKLS LSKDHDPFGS  240
FPVIRNDVQL ANKDDDEKSC GCTQPSTRNK AFRLAPHVGD WRMQKLQASK CWEVNPQSDD  300
ERHVNVDNET RNVFQNRKSG YMSERSQRDF PFKKRKLYYS NSFSNSDERS SDGICSSPTK  360
DLNRDASGYS LASSGVLIGI HSPSAYGLQQ PVQQLGRQSP KELMHPSGLM TPMRTVMEAV  420
TAILGGGLRI GVVFQGKKVR DDNKTLFQAG ISHDDKLDAL GFTLEPSSSR ASPSLGPEGR  480
CCVLPCETPR PLARCSPASA VIRNAIQQET YTAFLDHPGT NLSNFIESDH DSAPSPPDAS  540
LEKNAADSRA LVPVAAMDAE ALAAVPMRKP KRCETAQRRI RRPFSVSEVE ALVQAVEKLG  600
TGRWRDVKMR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL LDRVLIAHAY  660
WSQQQARQQM KHQSETRLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-545686714107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326335QRDFPFKKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358691.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X2
TrEMBLM0ZPY10.0M0ZPY1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000054760.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-127TRF-like 2