PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_05169.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 644aa MW: 71610.2 Da PI: 7.9753

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05169.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106	2.1e-33	357	411	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Sme2.5_05169.1_g00001.1 357 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVHGLTIYHVKSHLQKYRL 411 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05970	3.8E-34	3	102	IPR010285	DNA helicase Pif1-like
SuperFamily	SSF52540	3.72E-15	48	236	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF05970	9.2E-27	108	219	IPR010285	DNA helicase Pif1-like
PROSITE profile	PS51294	15.115	354	414	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.5E-32	356	412	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-17	356	411	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.8E-25	357	412	IPR006447	Myb domain, plants
Pfam	PF00249	3.4E-9	359	410	IPR001005	SANT/Myb domain
Pfam	PF14379	8.0E-23	444	490	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000723	Biological Process	telomere maintenance
GO:0006281	Biological Process	DNA repair
GO:0003677	Molecular Function	DNA binding
GO:0003678	Molecular Function	DNA helicase activity

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence Send to blast
MTNMSKQSGA AKLIRKAKVI IWDEAPMARR QTIETIDRSF RDIMDSEKPF GGEVMVFGGD 60 FRQVLPVVPR LMRAETVDSS LVKSYLWPSM EKIQLTRNMR ARIDLAFKES FIGEIFTGLQ 120 QNATTAKYVI ERAILASRND HVDNLNDKLI AMFPGESNTF NSFDSAEDDT NNYYQEEYLN 180 TLTSNALPPL ELKTNAPIML LRNLDPSNGL CNGTRMICKD FHRNVIHVEI SSGHYAINQV 240 FILRIQLSPL ENEGYPFKFI RKQFSISEME IGVAVGGAFL SSPLNILFDR VAPEDRLLKA 300 NLLLKTLSAW WQRRPSSSLV HKNILVTYSQ ILCCGGSTMD PTNGANNLNN NPSLASKQRL 360 RWTHELHERF VDAVAQLGGP DRATPKGVLR VMGVHGLTIY HVKSHLQKYR LAKYLPDSSS 420 DGKQSDKKES GDMLSSLDGS STGVQINEAL KLQMEVQKRL HEQLEVQRQL QLRIEAQGKY 480 LKKIIEEQQR LSGVLSEVPV PGVTPSVAGD NGLDSDNRTD PGTPAPTSES PHIDTSVQEH 540 VRSKSLSIDQ SFSSQHEPLT PDSGCRETSP INSSEGERSS KKQRVGTSAI STKADMLLPH 600 KILESSFSSP YQQPNPVFLG NNQFNLSSGL SLGNEGPKVS GSNI

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence Send to blast

MTNMSKQSGA AKLIRKAKVI IWDEAPMARR QTIETIDRSF RDIMDSEKPF GGEVMVFGGD  60
FRQVLPVVPR LMRAETVDSS LVKSYLWPSM EKIQLTRNMR ARIDLAFKES FIGEIFTGLQ  120
QNATTAKYVI ERAILASRND HVDNLNDKLI AMFPGESNTF NSFDSAEDDT NNYYQEEYLN  180
TLTSNALPPL ELKTNAPIML LRNLDPSNGL CNGTRMICKD FHRNVIHVEI SSGHYAINQV  240
FILRIQLSPL ENEGYPFKFI RKQFSISEME IGVAVGGAFL SSPLNILFDR VAPEDRLLKA  300
NLLLKTLSAW WQRRPSSSLV HKNILVTYSQ ILCCGGSTMD PTNGANNLNN NPSLASKQRL  360
RWTHELHERF VDAVAQLGGP DRATPKGVLR VMGVHGLTIY HVKSHLQKYR LAKYLPDSSS  420
DGKQSDKKES GDMLSSLDGS STGVQINEAL KLQMEVQKRL HEQLEVQRQL QLRIEAQGKY  480
LKKIIEEQQR LSGVLSEVPV PGVTPSVAGD NGLDSDNRTD PGTPAPTSES PHIDTSVQEH  540
VRSKSLSIDQ SFSSQHEPLT PDSGCRETSP INSSEGERSS KKQRVGTSAI STKADMLLPH  600
KILESSFSSP YQQPNPVFLG NNQFNLSSGL SLGNEGPKVS GSNI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	357	414	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	357	414	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-23	357	414	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	357	414	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	357	414	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	357	414	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	357	414	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	357	414	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	357	414	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	357	414	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	357	414	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	357	414	2	59	Protein PHOSPHATE STARVATION RESPONSE 1

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB192880	0.0	AB192880.1 Solanum tuberosum PPS4 mRNA for MYB-CC type transfactor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027768901.1	0.0	myb family transcription factor PHL7-like isoform X2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2796	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-84	G2-like family protein