PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_04961.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

SBP

Protein Properties

Length: 264aa MW: 29691.7 Da PI: 9.101

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_04961.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	68.2	1.6e-21	149	211	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCs r+rLa+hn+rrrk+q+ Sme2.5_04961.1_g00003.1 149 RCQAEGCNADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCS---------------RKRLADHNRRRRKNQQ 211 6*********************************************9...............5899999999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.7E-24	144	197	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	21.213	147	209	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.19E-26	148	213	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.1E-17	150	214	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MLSGGDEENQ QNDQNRQFFD PYVANTQTFT ENPYPHQHFP TIQQQNHQFF HTQNNPTTLY 60 DPRGYETCYT PHTQTSILQP NSGFMVVPKS EPHQFVGGGG GGIDFATSSR IGLNLGGRTY 120 FSSSEDDFVN RLYRRTRAVE TGSVMNTPRC QAEGCNADLT HAKHYHRRHK VCEFHSKAST 180 VIAAGLTQRF CQQCSRKRLA DHNRRRRKNQ QANLENSSKS LGSSRNSPSD SLARSPPDSG 240 AHCSSVTVAI SPPRISLDCF RQRP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-18	150	208	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:16095614, ECO:0000269\|PubMed:17093870}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF439376	0.0	JF439376.1 Solanum chacoense squamosa promoter binding protein-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006361510.1	1e-170	PREDICTED: squamosa promoter-binding-like protein 8 isoform X1
Swissprot	Q8GXL3	4e-62	SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBL	A0A0V0HNJ5	1e-168	A0A0V0HNJ5_SOLCH; Putative squamosa promoter-binding-like protein 8-like
TrEMBL	M1CUF7	1e-168	M1CUF7_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400074976	1e-169	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4846	23	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	4e-60	squamosa promoter binding protein-like 8

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xing S, et al. SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants (Basel), 2013. 2(3): p. 416-28 [PMID:27137384]