PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04732.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WOX
Protein Properties Length: 381aa    MW: 43000.5 Da    PI: 7.4282
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04732.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.73.6e-2277136357
                              --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                              +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  Sme2.5_04732.1_g00003.1  77 SRWNPTPEQLQTLEELYRRgTRTPSAEQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 136
                              7*****************99**************************************97 PP
2Wus_type_Homeobox115.52.6e-3776138365
        Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                              ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
  Sme2.5_04732.1_g00003.1  76 SSRWNPTPEQLQTLEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 138
                              79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.5E-574141IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-977136IPR009057Homeodomain-like
PfamPF000466.5E-2077136IPR001356Homeobox domain
SuperFamilySSF466894.23E-1277142IPR009057Homeodomain-like
CDDcd000861.71E-678138No hitNo description
PROSITE profilePS5007111.25682137IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MWMMGYNDGG DFNMPDSFNG RKLRPLMPRA PHAPNATATN CFRSIHGDNF IALNHHQLAM  60
SEQNKRDFNT QQLVVSSRWN PTPEQLQTLE ELYRRGTRTP SAEQIQHITA QLRRYGKIEG  120
KNVFYWFQNH KARERQKRRR QLESAANGAG ANGAGGGDDQ SHGNCNAENS EKKEPGANRT  180
VFEMEQTKHW PSPTNCSTLA EKTAATTKAA AGVAESCRVA AERWIPFDER EQRRNLLAER  240
NATWQMMHLS CSPPNNNHIA TICSNSITTA TCTPIIRSCP STPTTMDHHQ PKQLFKAKDH  300
LNIFIEPFRS AGDQKHENIM GDDNEGHGES QTLELFPLRS SNDNNDENNF SDKDEIGAAA  360
NSNNNFSGSH YQFFEFLPLK N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2762530.0JF276253.1 Nicotiana sylvestris STENOFOLIA 1 (STF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554423.10.0PREDICTED: WUSCHEL-related homeobox 1
TrEMBLA0A2G3CZV00.0A0A2G3CZV0_CAPCH; Putative WUSCHEL-related homeobox 2
STRINGPGSC0003DMT4000144640.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46812342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.12e-54WUSCHEL related homeobox 1