PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04498.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 538aa    MW: 60426.8 Da    PI: 6.2741
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04498.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-161111871698
                              EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                       B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                               ++p +fa+  ++   ++++  led+sg++W+v +  +++ g+  +++GW  F +++gLk gDf+vF++++ + f  vv+++ 
  Sme2.5_04498.1_g00004.1 111 KYFPPRFARLVSHL--TDQETYLEDSSGQRWRVGI--CNHNGSLAIRQGWHTFSSEHGLKMGDFLVFHYIQGQHF--VVQIYG 187
                              67899999777644..4568***************..*********************************97777..999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.67596189IPR003340B3 DNA binding domain
SMARTSM010193.3E-7103189IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-19107191IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-14110186IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-18111191IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-14112186No hitNo description
PROSITE profilePS508638.656429527IPR003340B3 DNA binding domain
CDDcd100177.55E-7438523No hitNo description
SuperFamilySSF1019361.24E-8439524IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-6442523IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MDELTRSIQE EVPWCMLFAN YIVLIDETRD KVNDRLEVWK HTLESKGFKL SRTKIEYLEC  60
KFSVARDESD IENVVAIWGG ALASQNSHIQ KVQVAEMRML RWMCGHTRSD KYFPPRFARL  120
VSHLTDQETY LEDSSGQRWR VGICNHNGSL AIRQGWHTFS SEHGLKMGDF LVFHYIQGQH  180
FVVQIYGASG CQKINSYNGT RTGKKRLRIN STATSHDELS PEADINLRKK WNSTPSVTAV  240
PESERAGHQP VTSTFASNTD ADTGEQQIAP QEEGTSDVLP GENRPHNPTD SISQRGSSSV  300
DVAPLEMEFV TLKAPFLDIK MLQTEKNSEP VNDITLLSQT DENGHHGDLI SSTSLKSAEH  360
GSNDKETRVD ELEQKEMAAK TYCPSEKLNG KEPKTTEKDG QGYPDAIIGN NKAIKSEPAD  420
SGDTSFPDAD TFSCSLRVDG RNFLELPQSW PRVLTSRKKM GRIITYLKGP DNRCWPVIYH  480
ENFGCKILAG NWALFTAVYG LKPGDECLFQ LSDLSKRMFT VNIAHKVDVT QTTLSSLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0138510.0BT013851.1 Lycopersicon esculentum clone 132811R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234163.10.0uncharacterized protein LOC101247292 isoform X2
RefseqXP_019068313.10.0uncharacterized protein LOC101247292 isoform X1
TrEMBLA0A3Q7FDL40.0A0A3Q7FDL4_SOLLC; Uncharacterized protein
STRINGSolyc03g007140.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-09B3 family protein