PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_04475.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 167aa MW: 18509.5 Da PI: 6.9736 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.7e-20 | 95 | 145 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k++r +lg++ t+e+Aa a+++a+ k++g Sme2.5_04475.1_g00002.1 95 RYRGVRRRP-WGKFAAEIRDP---NkKNARLWLGTYETPEDAALAYDQAAFKIRG 145 8********.**********9...5467*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.19E-32 | 94 | 155 | No hit | No description |
SMART | SM00380 | 8.3E-39 | 95 | 159 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.4E-15 | 95 | 145 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.605 | 95 | 153 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-32 | 95 | 154 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-23 | 95 | 154 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.4E-13 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-13 | 135 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MNPADFSLLQ SIQHHLLNDS DIPVIFSTID SNNSPTSSFS NSANSIESNF YYGELAPLIN 60 PSTSTLEAST EKSEVEESKD TVAANVTHAS QDWKRYRGVR RRPWGKFAAE IRDPNKKNAR 120 LWLGTYETPE DAALAYDQAA FKIRGSKARL NFPHLVGSGV PKPPRDG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-30 | 94 | 159 | 4 | 69 | ATERF1 |
3gcc_A | 4e-30 | 94 | 159 | 4 | 69 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 1e-102 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016544944.1 | 1e-90 | PREDICTED: ethylene-responsive transcription factor 13-like | ||||
TrEMBL | A0A1U8EM38 | 3e-89 | A0A1U8EM38_CAPAN; ethylene-responsive transcription factor 13-like | ||||
STRING | PGSC0003DMT400091474 | 2e-89 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 2e-37 | ethylene-responsive element binding factor 13 |