PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04437.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 271aa    MW: 31339.8 Da    PI: 4.7339
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04437.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.2e-1974124155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              ++++GVr+++ +g+W+AeIrd +     r  r++lg+f taeeAa  +++a+ +++g
  Sme2.5_04437.1_g00004.1  74 KKFRGVRQRP-WGKWAAEIRDpV-----RkMRIWLGTFETAEEAAMVYDQAAIQIRG 124
                              59********.**********44.....559***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.73E-3274131No hitNo description
PfamPF008473.5E-1275124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3075132IPR001471AP2/ERF domain
SMARTSM003803.3E-3775138IPR001471AP2/ERF domain
PROSITE profilePS5103223.16975132IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2175131IPR016177DNA-binding domain
PRINTSPR003671.1E-107687IPR001471AP2/ERF domain
PRINTSPR003671.1E-1098114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MNHNHNNFTP RVVRISYTDC DATDSSGDDE DDEKNGLTKY VTEIRFEKRD VRKSSNKKKK  60
KKKVVDLKKD ENVKKFRGVR QRPWGKWAAE IRDPVRKMRI WLGTFETAEE AAMVYDQAAI  120
QIRGPDALTN FIEPPSKKES MITSVSDYDS TGESENLCSP TSVLRHDDNN NNNNTNNNNF  180
DVDAGAKITK EEMDAERKRM EIAMQNDENG IMFDDSLPLM DQNFLKDFFD FRSPSPLMDD  240
VLLPFSLPEE LKFDENSKLD ENTWATGFYY S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2274131159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15662KKKKKKK
25868KKKKKVVDLKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758972.11e-114PREDICTED: ethylene-responsive transcription factor CRF3-like
TrEMBLA0A1U7USC61e-113A0A1U7USC6_NICSY; ethylene-responsive transcription factor CRF3-like
STRINGXP_009758972.11e-114(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-34cytokinin response factor 4