PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04312.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 377aa    MW: 43012.8 Da    PI: 4.9867
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04312.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.91.6e-33141062102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.X CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.F 86 
                              Fl k+ye+++d++ + ++sws++++sf+v+++ +fa+++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++  F
  Sme2.5_04312.1_g00009.1  14 FLAKTYEMVDDPSCDAIVSWSSSNRSFIVWNPPDFARDLLPRYFKHNNFSSFIRQLNTYGFRKIDPEK---------WEFANEDnF 90 
                              9****************************************************************999.........*****988* PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  87 kkgkkellekikrkks 102
                               + + +ll++i+r+k 
  Sme2.5_04312.1_g00009.1  91 VRVHPHLLKNIHRRKP 106
                              *************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.31E-3310104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-5710104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.1E-3611104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.3E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.6E-3014104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDEATCSTHA LPPFLAKTYE MVDDPSCDAI VSWSSSNRSF IVWNPPDFAR DLLPRYFKHN  60
NFSSFIRQLN TYGFRKIDPE KWEFANEDNF VRVHPHLLKN IHRRKPVHSH SAQNLHGLSS  120
PLTESERQSY KEDIQKLKHE NGSLHMDLQR HKQDHQALEL QMQDLTERVQ HAEHRQKTML  180
SALARTLDRP VMDLTHMPQL QVNDRKRRFP GNSCLYDEND LQDMQGISSR ALTWENMNPP  240
SLLAMNAELL DQLESSLTFW GDVLQDVDRA GIQQNCSLEL DESTSCADSP AISYTQLNVD  300
VGPKASDIDM NSEPNANTTL EVVEPEDKTA VAGTATNVPT GVNDVFWEQF LTENPGSVDA  360
SEVQSERKDI DSKNNRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-211110426129Heat shock factor protein 1
5d5v_B2e-211110426129Heat shock factor protein 1
5d5v_D2e-211110426129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0144840.0AB014484.1 Nicotiana tabacum NtHSF2 mRNA for heat shock factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358092.10.0PREDICTED: heat stress transcription factor A-4a
RefseqXP_006358093.10.0PREDICTED: heat stress transcription factor A-4a
RefseqXP_015169267.10.0PREDICTED: heat stress transcription factor A-4a
RefseqXP_015169268.10.0PREDICTED: heat stress transcription factor A-4a
TrEMBLM1CRG00.0M1CRG0_SOLTU; Uncharacterized protein
STRINGSolyc02g072000.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-100heat shock transcription factor A4A