PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_04190.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

WRKY

Protein Properties

Length: 339aa MW: 37641.8 Da PI: 9.0618

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_04190.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	91.6	6.2e-29	166	225	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh Sme2.5_04190.1_g00001.1 166 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApTCPVKKKVQRSVEDQSILVATYEGEHNHC 225 58*************************99**************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.4E-28	157	225	IPR003657	WRKY domain
PROSITE profile	PS50811	24.811	161	224	IPR003657	WRKY domain
SuperFamily	SSF118290	3.53E-24	163	224	IPR003657	WRKY domain
SMART	SM00774	1.2E-32	166	226	IPR003657	WRKY domain
Pfam	PF03106	2.1E-23	167	224	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MEFTSLVDTS LDLNFKPLRV VDEAPKQEVE SNFIGLGRDV VPAKDEAGDL MEELNRLSAE 60 NKKLTEMLTI MCQNYNSLRN QLTEYLSKQN SSGSGSDHGQ NSDGSKNRKV VNNNNEIVKS 120 SVQVLNSESS SSDEDASTKK PREEHIKTKT SRVYMRTEAS DTSLIVKDGY QWRKYGQKVT 180 RDNPSPRAYF KCSFAPTCPV KKKVQRSVED QSILVATYEG EHNHCKVDNS GPIATTSPSS 240 RFNPKNNVPS GPGPTFTLDL SEPKTFPQKD PKRQVNSNTS TSNASGQKRK SPASDQQQQN 300 RPELQHFLIE QMASSLTKDP SFQAALAAAI SGKFLQNNK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-19	165	224	16	74	Probable WRKY transcription factor 4
2ayd_A	7e-19	165	224	13	71	WRKY transcription factor 1
2lex_A	8e-19	165	224	16	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250\|UniProtKB:Q9SUP6}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	4e-95	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001303844.1	0.0	probable WRKY transcription factor 40
Swissprot	Q9SAH7	2e-84	WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBL	A0A3Q7GHS3	0.0	A0A3Q7GHS3_SOLLC; Uncharacterized protein
STRING	Solyc03g116890.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2855	24	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	3e-83	WRKY DNA-binding protein 40

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang Y, et al. Regulation of oncogene expression in T-DNA-transformed host plant cells. PLoS Pathog., 2015. 11(1): p. e1004620 [PMID:25615824] Geilen K,Böhmer M Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana. Sci Rep, 2015. 5: p. 13369 [PMID:26293691] Geilen K,Böhmer M Dynamic subnuclear relocalization of WRKY40, a potential new mechanism of ABA-dependent transcription factor regulation. Plant Signal Behav, 2015. 10(11): p. e1106659 [PMID:26479147] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Carrió-Seguí À,Romero P,Sanz A,Peñarrubia L Interaction Between ABA Signaling and Copper Homeostasis in Arabidopsis thaliana. Plant Cell Physiol., 2016. 57(7): p. 1568-1582 [PMID:27328696] Lu K, et al. Overexpression of an Arabidopsis cysteine-rich receptor-like protein kinase, CRK5, enhances abscisic acid sensitivity and confers drought tolerance. J. Exp. Bot., 2016. 67(17): p. 5009-27 [PMID:27406784] Birkenbihl RP,Kracher B,Roccaro M,Somssich IE Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity. Plant Cell, 2017. 29(1): p. 20-38 [PMID:28011690] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643] Zhang S, et al. The Arabidopsis Mitochondrial Protease FtSH4 Is Involved in Leaf Senescence via Regulation of WRKY-Dependent Salicylic Acid Accumulation and Signaling. Plant Physiol., 2017. 173(4): p. 2294-2307 [PMID:28250067] Cheng P, et al. The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis. Front Plant Sci, 2018. 9: p. 182 [PMID:29497438]