PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04027.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 356aa    MW: 39062.6 Da    PI: 6.7891
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04027.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.89.5e-28150209258
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                              +Dg++WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r ++dp v+e+tY+++H +
  Sme2.5_04027.1_g00002.1 150 EDGFTWRKYGQKEILGSRFPRAYYRCTHQklyHCPAKKQVQRLDDDPYVFEVTYRSQHIC 209
                              7****************************9999*************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-26147210IPR003657WRKY domain
SuperFamilySSF1182903.79E-24148210IPR003657WRKY domain
SMARTSM007746.1E-35149211IPR003657WRKY domain
PfamPF031061.1E-24150209IPR003657WRKY domain
PROSITE profilePS5081120.048150207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEETIATILY GCKLGREVEA NLPNWGNQRG VLLSKTEEII GVFNNVRERL ISQQQQQQQQ  60
AVQEWLSSSG QLFHAADAAT TAYAVHGLPQ ENDQKGGGGS STMVPMDASH DSSRAASSSS  120
QRQRTRKGDT DRRIVRVSAP RMGNLELPPE DGFTWRKYGQ KEILGSRFPR AYYRCTHQKL  180
YHCPAKKQVQ RLDDDPYVFE VTYRSQHICY MSATAPTVPL PLVEEITHQT TTTPPPAPLL  240
LPPPTSASLS GHWLSMDIKP QIDQAGTSYT TTPFDIQRDF GHGGSVGSLA SICNVVTAGS  300
GGGAGPSGSR FGREVDYQPV VDMADAMFNS GSSSNTSMDI IFSSMDDKWD TAEKKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-18150209968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-107HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577154.10.0PREDICTED: WRKY transcription factor 55-like
TrEMBLA0A1U8H9Q61e-179A0A1U8H9Q6_CAPAN; WRKY transcription factor 55-like
STRINGPGSC0003DMT4000226381e-175(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92801824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-46WRKY DNA-binding protein 55