PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_04025.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GATA | ||||||||
Protein Properties | Length: 201aa MW: 22851.6 Da PI: 8.2779 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.9 | 7.6e-20 | 112 | 146 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +l Sme2.5_04025.1_g00004.1 112 CTHCDVTKTPQWREGPLGPKTLCNACGVRYRSGRL 146 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.3E-14 | 106 | 156 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.345 | 110 | 142 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.18E-15 | 111 | 169 | No hit | No description |
CDD | cd00202 | 8.41E-15 | 111 | 160 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.8E-14 | 111 | 143 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.1E-17 | 112 | 146 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 112 | 137 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MDEDFENIFN GLDFLAEPEK VGKDWDAVAT HEEWQHSDSM LSYQSPISVL DAISFQFGSK 60 GRRSKRARSS TFNPWLLMPP IPNTTSTDNN SSDAKSGKEN KRKSNCSLFK KCTHCDVTKT 120 PQWREGPLGP KTLCNACGVR YRSGRLLPEY RPAASPTFIP SLHSNSNRKV VEMRRKTVEE 180 SPECDSQKFA PLPSYWFDTY C |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004242094.2 | 2e-86 | GATA transcription factor 11-like | ||||
Swissprot | Q6DBP8 | 4e-38 | GAT11_ARATH; GATA transcription factor 11 | ||||
TrEMBL | A0A3Q7H0T5 | 4e-85 | A0A3Q7H0T5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g075140.2.1 | 6e-86 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3134 | 21 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08010.2 | 1e-39 | GATA transcription factor 11 |