PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03943.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 394aa MW: 44368.2 Da PI: 4.6234 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.2 | 1.4e-18 | 107 | 160 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Sme2.5_03943.1_g00004.1 107 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 160 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130 | 9.6e-42 | 106 | 198 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +kkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy++Lk+++d+lk++ ++L++++e+ Sme2.5_03943.1_g00004.1 106 QKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYNVLKANFDSLKHNYDSLKHDNEA 191 69************************************************************************************ PP HD-ZIP_I/II 87 Lreelke 93 L +e++e Sme2.5_03943.1_g00004.1 192 LIKEIRE 198 **99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.75 | 102 | 162 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-19 | 103 | 164 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.8E-18 | 105 | 166 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.42E-16 | 106 | 163 | No hit | No description |
Pfam | PF00046 | 9.2E-16 | 107 | 160 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-19 | 109 | 169 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.3E-5 | 133 | 142 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 137 | 160 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 142 | 158 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.9E-18 | 162 | 202 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MKVWLVEKKR GWTKSKLSLK TLPFWLVLVV KVSVYMSSSY NLEFGSSIKI MKRLGSSDSL 60 GALMSMCPST TDDQNHGNSH VYSTRDFQSM LDLGLDEEGC VEESGQKKRR LSVDQVKALE 120 KNFEVENKLE PERKVKLAQE LGLQPRQVAV WFQNRRARWK TKQLERDYNV LKANFDSLKH 180 NYDSLKHDNE ALIKEIRELK SKVYGGENRE SRGGAAVVAV KEEAMESESD DKVIEQNQAN 240 DLLEEEEEDQ DDDVEINATI ASTIFADFNK DGSSDSDNSS AILNEDNSPN AAAISSSGAF 300 LISNDGGGGV GCSSSKSLNF CFKFTESSPK SILGDPQKAN CYNYQPPPTT TTQYVKMEEH 360 NFFNSEESCS TFFSDEQAPT LQWYCPEDWN FKDS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 162 | RRARWKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 0.0 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015058295.1 | 0.0 | homeobox-leucine zipper protein ATHB-6 | ||||
TrEMBL | A0A3Q7JIT6 | 0.0 | A0A3Q7JIT6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g010270.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2718 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 2e-63 | homeobox protein 6 |