PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03742.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 491aa    MW: 55569.6 Da    PI: 5.6492
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03742.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.00186184123
                             EEETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                             + C  Cgk Fs+   L  H+++ H
  Sme2.5_03742.1_g00001.1 61 HICYLCGKEFSSGKALGGHMSSaH 84
                             68******************9988 PP
2zf-C2H214.88e-05138157221
                              EETTTTEEESSHHHHHHHHH CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                              +C+ Cgk F+++ +L  H+r
  Sme2.5_03742.1_g00001.1 138 VCELCGKNFPSNKSLFGHMR 157
                              7******************8 PP
3zf-C2H210.80.0015358380123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC+ Cgk F ++  L  H ++H
  Sme2.5_03742.1_g00001.1 358 HKCNMCGKIFASHQALGGHRSSH 380
                              79**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.3076189IPR007087Zinc finger, C2H2
SMARTSM003551.56184IPR015880Zinc finger, C2H2-like
PfamPF139129.8E-86184IPR007087Zinc finger, C2H2
PROSITE patternPS0002806384IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.242137164IPR007087Zinc finger, C2H2
SMARTSM003550.01137159IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.02E-9138159No hitNo description
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
PfamPF139124.0E-6139161IPR007087Zinc finger, C2H2
SuperFamilySSF576671.02E-9353380No hitNo description
SMARTSM003550.058358380IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.512358385IPR007087Zinc finger, C2H2
PfamPF139127.3E-6358381IPR007087Zinc finger, C2H2
PROSITE patternPS000280360380IPR007087Zinc finger, C2H2
SuperFamilySSF576677.82E-6432461No hitNo description
PfamPF139121.3E-8434458IPR007087Zinc finger, C2H2
PROSITE profilePS501579.556435462IPR007087Zinc finger, C2H2
SMARTSM003550.065435457IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280437457IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MEAQDDQENN GSCEKDPSLN NFKVKIKIPK LMQDEDADRG GEDVNTVRDE TNLFMMQKKD  60
HICYLCGKEF SSGKALGGHM SSAHVQANQR LEESLKKKKN FTQEKSLKLM KRRFDAVEIE  120
EDDDEEEGIR DGVFDKVVCE LCGKNFPSNK SLFGHMRCHP DRDWRGMKPP SKKIPKNKGF  180
QANFHDGDED VDEDEDGDYR FASLRDEEED EEEAEERSVR VNDVVLPPLK GWGAKDRRGR  240
SPHKRSVSGI NLDDKELQDA VEQLIRLVHG DNNNNNNNTN PNSEVMCSSN SVSSAPKEAP  300
LSDLKDKSKK KVAVDEENRE ETCSNSVAGK KRKRKKEVIK LEPGSKDLVI KKSPEGKHKC  360
NMCGKIFASH QALGGHRSSH NKFKISIENT IDHQDQEIKV RNQEDHAVQL GDQETNNCNI  420
IIDQNGSNNN NNNVHKCKFC DKIFPTGQAL GGHQRCHLTN NQEEESSSQI ASKVLDFDLN  480
ELPDLDDYPL L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112LKLMKRR
2329334KKRKRK
3329335KKRKRKK
4331335RKRKK
5331336RKRKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755233e-87HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546163.11e-170PREDICTED: uncharacterized protein LOC107846241
TrEMBLA0A2G2VPE41e-174A0A2G2VPE4_CAPBA; Uncharacterized protein
STRINGPGSC0003DMT4000848051e-166(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.14e-16C2H2 family protein