PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03529.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 38741.3 Da PI: 5.4289 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.2 | 3.2e-53 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtd+elv +yLk+k+++ ++el evi+ +d+yk++PwdLp k + + + ewyfF++rdkky++g+r+nrat+sgyWk Sme2.5_03529.1_g00003.1 6 LPPGFRFHPTDQELVGYYLKRKADELEIEL-EVIPVIDLYKFDPWDLPeKsFLPKCDMEWYFFCSRDKKYPNGSRTNRATNSGYWK 90 79****************************.99**************95344445678**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkdk+v++ k ++vg +ktLvfy+grap g +tdWvmheyrl Sme2.5_03529.1_g00003.1 91 ATGKDKKVVC-KPAVVGYRKTLVFYRGRAPFGDRTDWVMHEYRL 133 **********.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-61 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.316 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MAGISLPPGF RFHPTDQELV GYYLKRKADE LEIELEVIPV IDLYKFDPWD LPEKSFLPKC 60 DMEWYFFCSR DKKYPNGSRT NRATNSGYWK ATGKDKKVVC KPAVVGYRKT LVFYRGRAPF 120 GDRTDWVMHE YRLCDDVSQG TSSFQGPFAL CRVIKRKDNI SLKTSYVHGG TAFKQVECSS 180 SIEGFTSTVA LNEPLVLSDD MPTPATYVSG NSNYSTPVNS PYQTTRIEDY DSAMGSDAAS 240 LWMSQNMVLD PSKECPRGRS ISGNYQHVFS NSTLWQPSDH YDFTSSSSFP YFSGEVELSG 300 DLSGYGCVSP FSVHGSYMEF YDDKDISYKG YNQNDLLVNS NLC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-52 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-52 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-52 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-52 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-52 | 1 | 157 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 5e-52 | 1 | 157 | 12 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC158308 | 1e-163 | KC158308.1 Solanum lycopersicum AFLP fragment TGG2, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006361176.1 | 0.0 | PREDICTED: NAC domain-containing protein 86-like | ||||
TrEMBL | A0A3Q7GVA0 | 0.0 | A0A3Q7GVA0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g061080.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6256 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46590.1 | 9e-75 | NAC domain containing protein 96 |