PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03411.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | YABBY | ||||||||
Protein Properties | Length: 176aa MW: 19799.4 Da PI: 9.5637 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 228.9 | 1.3e-70 | 7 | 170 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke 89 ssse+vCy+qCnfCntilav+vP + ++++vtvrCGhC++lls n+ q+ + ++ ++l+ ++ + +++ +n+ + +++ Sme2.5_03411.1_g00006.1 7 SSSSERVCYLQCNFCNTILAVNVPCNNMLTIVTVRCGHCANLLSANIGSLLQAFPFQDV--QKLQRQQYTNVENNASNYMAYGSSS 90 6899****************************************************996..4444444444444444444443333 PP YABBY 90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s+ +s + +++s+ + e+ p irPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl Sme2.5_03411.1_g00006.1 91 SSS-SSSKFNRFSTIVSPEIESRIPPIRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPRIHFGL 170 333.3333445577666666555556*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.1E-71 | 9 | 170 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.18E-7 | 115 | 163 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.4E-4 | 118 | 164 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MTSFSSSSSS ERVCYLQCNF CNTILAVNVP CNNMLTIVTV RCGHCANLLS ANIGSLLQAF 60 PFQDVQKLQR QQYTNVENNA SNYMAYGSSS SSSSSSKFNR FSTIVSPEIE SRIPPIRPPE 120 KRQRVPSAYN QFIKEEIQRI KANNPEISHR EAFSTAAKNW AHFPRIHFGL KLEGNK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ667754 | 0.0 | KJ667754.1 Solanum melongena FAS protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234390.1 | 1e-104 | YABBY transcription factor | ||||
Swissprot | Q9XFB0 | 1e-64 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A068FJR7 | 1e-125 | A0A068FJR7_SOLME; FAS protein | ||||
STRING | Solyc11g071810.1.1 | 1e-104 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 6e-56 | YABBY family protein |
Publications ? help Back to Top | |||
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