PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03353.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 288aa    MW: 32620.6 Da    PI: 6.613
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03353.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.3e-32147203258
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                              +Dgy+WrKYGqK vk+s+fpr+YYrCt a+C+vkk+ver+ +dp++v +tYeg+H h
  Sme2.5_03353.1_g00002.1 147 EDGYRWRKYGQKAVKNSPFPRNYYRCTNATCSVKKRVERCFSDPTIVMTTYEGKHSH 203
                              8*******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.9E-34131206IPR003657WRKY domain
SuperFamilySSF1182905.89E-28138204IPR003657WRKY domain
PROSITE profilePS5081130.664141206IPR003657WRKY domain
SMARTSM007746.9E-37146205IPR003657WRKY domain
PfamPF031061.1E-24147203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEDNPVYSFD NYNNHSFTGL ISDYNINSSS LGFMELLGFQ DWCSSASVFE LPKEENYCPA  60
VCVPEEEVKP SAAPVDAGNV LNTPSTPNGS SISSEGHTHT TDGEVENHDQ PNTKSKQQLK  120
AKKTICQKKQ KEPRFAFMTK SEVDFLEDGY RWRKYGQKAV KNSPFPRNYY RCTNATCSVK  180
KRVERCFSDP TIVMTTYEGK HSHLSPMNTM MPRPSCYPVT PLLPSPLPMQ FNFNQSSNNL  240
TNPNLVMNNQ LEHAAFVAQG RRFCSTTEMM GDQGLDLQDL MLKQDYNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-261392061077Probable WRKY transcription factor 4
2lex_A2e-261392061077Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2299921e-126AY229992.1 Capsicum annuum transcription factor CaWRKY1 (WRKY1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275158.11e-157WRKY transcription factor 4
TrEMBLM1AI801e-160M1AI80_SOLTU; WRKY transcription factor
STRINGPGSC0003DMT4000233681e-160(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.13e-40WRKY DNA-binding protein 23