PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03324.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

YABBY

Protein Properties

Length: 135aa MW: 15252.7 Da PI: 9.0569

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03324.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	142.1	6.2e-44	11	108	75	170
YABBY 75 lkveeenlksnvek.eesastsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaa 157 ++++e++++ +++ + s+s+s+ s + + d++ pr pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aa Sme2.5_03324.1_g00002.1 11 KRQNESSIEDGMSRgYGSSSSSTDSCHRfsPVPADHDQPRSPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAA 95 3444444444333312222222222221236788999999999.9*************************************** PP YABBY 158 knWahfPkihfgl 170 knWahfP+ihfgl Sme2.5_03324.1_g00002.1 96 KNWAHFPHIHFGL 108 *********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.4E-41	11	108	IPR006780	YABBY protein
SuperFamily	SSF47095	4.84E-9	48	101	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.8E-5	56	102	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MQQYDDNSDS KRQNESSIED GMSRGYGSSS SSTDSCHRFS PVPADHDQPR SPPIRPPEKR 60 QRVPSAYNRF IKEEIQRIKA SNPDISHREA FSTAAKNWAH FPHIHFGLKL DGNKQTNKLD 120 HSVAGEGPQK SIGFY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667765	0.0	KJ667765.1 Solanum melongena YAB2 protein mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006361110.1	8e-73	PREDICTED: putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	5e-49	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A068FLJ5	1e-87	A0A068FLJ5_SOLME; YAB2 protein (Fragment)
TrEMBL	A0A068FLJ9	1e-87	A0A068FLJ9_SOLTO; YAB2 protein (Fragment)
STRING	PGSC0003DMT400015197	3e-72	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	6e-51	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]