PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02990.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 164aa    MW: 18972.1 Da    PI: 6.5292
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02990.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.81.3e-143593563
                             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                             ++ +r+q+NRe+ArrsR RK++ ++ L   v++L++eN+   ++++  ++++a++++e+
  Sme2.5_02990.1_g00004.1 35 RKRKRMQSNRESARRSRMRKQKHLDDLMCQVAQLKKENSNILSNINITTQQYANVEAEN 93
                             5789*************************************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.6E-203195IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-103385No hitNo description
PROSITE profilePS5021711.0593396IPR004827Basic-leucine zipper domain
PfamPF001702.6E-113593IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-123587No hitNo description
CDDcd147021.18E-183687No hitNo description
PROSITE patternPS0003603853IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MMATSSGNSS QIQNNTNNNS NNSGSDEVLM VVDERKRKRM QSNRESARRS RMRKQKHLDD  60
LMCQVAQLKK ENSNILSNIN ITTQQYANVE AENSVLRAQM MELSQRLQSL DEILSYINNS  120
NNNINTNNGV IETHNYQEDF QINPWNLMYV NQPIMASADM LYQY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13455RKRKRMQSNRESARRSRMRKQK
24754RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754435e-99HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755165e-99HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074279.12e-85bZIP transcription factor 11-like
SwissprotC0Z2L55e-49BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A0V0H5266e-82A0A0V0H526_SOLCH; Putative ovule protein
STRINGPGSC0003DMT4000094931e-82(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.14e-41basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]