PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02955.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 331aa    MW: 37217.6 Da    PI: 8.0161
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02955.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-161461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+ Ed++l+d++k  G g W+  +++ g++R++k+c++rw++yl
  Sme2.5_02955.1_g00006.1 14 KGAWTPSEDKILIDYIKINGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                             79********************************************97 PP
2Myb_DNA-binding50.83.9e-1667110146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
  Sme2.5_02955.1_g00006.1  67 RGNISPDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                              7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.463961IPR017930Myb domain
SuperFamilySSF466892.5E-2812108IPR009057Homeodomain-like
SMARTSM007172.1E-131363IPR001005SANT/Myb domain
PfamPF002499.8E-151461IPR001005SANT/Myb domain
CDDcd001671.37E-101661No hitNo description
PROSITE profilePS5129424.87262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2465116IPR009057Homeodomain-like
SMARTSM007171.3E-1566114IPR001005SANT/Myb domain
PfamPF002491.5E-1467110IPR001005SANT/Myb domain
CDDcd001671.36E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRKPCCSKE GLNKGAWTPS EDKILIDYIK INGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NISRRLQEGT  120
GSGHANRVTS SNRQRHRSSH AKSAKNPMAQ PQQNSQEHVV PHQDSQYLLT DVGHGGSLFS  180
SSPCLVVCTT NAVRCTKAFI SPTENENNDK VMIEGNVTTN IVTSSSSSLS ISSLSEQVLQ  240
QQPVSGSYSP TNLSVELENY NFNFMFGFDV DDPFLSELLN EPDLRDQILE NSPTSTIVNG  300
DHEVIGDIYN SNKNQRQHND LELWINGFFS C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755245e-79HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252516.11e-166myb-related protein 308-like
TrEMBLA0A3Q7JB771e-165A0A3Q7JB77_SOLLC; Uncharacterized protein
STRINGSolyc12g049300.1.11e-165(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.19e-62myb domain protein 3