PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02909.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 869aa    MW: 96844.8 Da    PI: 9.6718
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02909.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-08173193526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               Cr+fa+ G C++G+ C+F H+
  Sme2.5_02909.1_g00006.1 173 VCRNFAA-GNCRRGSECRFVHP 193
                              6******.*************9 PP
2zf-CCCH21.34.6e-07256278326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                              t  Cr+fa+ G C+ G++C+F+H+
  Sme2.5_02909.1_g00006.1 256 TITCRNFAK-GNCRWGASCRFSHD 278
                              668******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.925169195IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-6170194IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5172192IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-6173193IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4253279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028253280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5256278IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4256278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.432304330IPR000571Zinc finger, CCCH-type
SMARTSM003560.96304329IPR000571Zinc finger, CCCH-type
PfamPF146080.06310327No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MGESAKRRKS LWDAEEESPN SPKLVEWGAP KADSSWQSKS RSGWSSGDNV TGTEELRKEN  60
YHYKSMSPAF ERRGRRSNSH SPDNGRAQSR RYPGRARSRS RSRSRSRTRS RGRGEGRSRS  120
RSRGRDRFRT RSRSRDRGCM RVQNRSRSPL YNSKRDSYAS GDRRTGLHMS SQVCRNFAAG  180
NCRRGSECRF VHPDGASHRD GGHSEDNLTE RLGSRPERGH ISRYNDSEGP VYQSRDRLPD  240
MHHLEDEMHR NRSRGTITCR NFAKGNCRWG ASCRFSHDGA SGDNYDKGIR SASFDHGQDN  300
QATRTGKSLC EYFAAGKCYK DNCKFSHDAT SRNHEMRPSD DIGGHRFDDK NNWLNGPKWD  360
NEARPSDLVN ASGWDESVVR KDTAVTVLTD RTCERPGHSI ENENRTWGTE PQFMNSDRER  420
GVSPHRGSAS HLNALNISES SVIQNFSNAQ DIHLTSHASD LNIERTSAHG VGHNSNQGAS  480
GTILSAATAT QPYGSAGSFV QPQGLTEDSI ARTLGSNAVN EFMNTRDSVH HVRLPGQSFS  540
GTGIGMSSEH SAVLNGTHQE QNVFLPVPST GLNKREALGT PEMLEFKVPQ NLSGAAAGEQ  600
VHPMETSPTS MIKKFEEGLR EAQRQSVLNA SGPSGMLPSN QISSLVHALY GQTNPEMRVP  660
DNYHPPDGLE LNTSGNFKLP PDNSFYLDRD SNKAPMEQMN QSSTVGPELG NNGQIDEVKQ  720
QENKLVEVDG KDKLAPEQSK DVQKNDHPGA VNLLGKVEEG STNRDEKVMR LFKNALIEFV  780
KEILKPTWKE GKMSREVHKT VVKKVVDKVT SAIPGEQLPK TQEKIEQYLS YSKPKITKLV  840
QEWEKPKLEV AIRLLVTIKS TAAQDVSPV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126136RFRTRSRSRDR
2128136RTRSRSRDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356284.10.0PREDICTED: zinc finger CCCH domain-containing protein 55
RefseqXP_006356285.10.0PREDICTED: zinc finger CCCH domain-containing protein 55
RefseqXP_015168257.10.0PREDICTED: zinc finger CCCH domain-containing protein 55
TrEMBLM1CB950.0M1CB95_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000637990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-11C3H family protein