PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02878.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HB-other | ||||||||
Protein Properties | Length: 317aa MW: 35404.3 Da PI: 6.6789 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.2 | 2.5e-17 | 65 | 120 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+e+Le+l+e+++yp+ e +++LA++ gLte+q++ WF+ rR k+k+ Sme2.5_02878.1_g00009.1 65 SKRIIKTRAQVEALEKLYEEHKYPTDELKADLAESSGLTEKQISGWFCHRRLKDKR 120 589999************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-19 | 50 | 120 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.56E-16 | 56 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.92 | 61 | 121 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.4E-17 | 63 | 125 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.7E-15 | 66 | 120 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.25E-16 | 66 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MEQLRKTLVQ EALVESSETT LEIGLEGLAT RSLDHPSYGG TPNLSEVHPK DEHFKDDKGH 60 PEKNSKRIIK TRAQVEALEK LYEEHKYPTD ELKADLAESS GLTEKQISGW FCHRRLKDKR 120 LSNGEIYVNG RQDRSSGVIQ DHGSGFRQDS CGSTKQADDK KFDHREVESR RLTGPEFSTA 180 DVACEVGTHF RGKSNCMDDD SSRSSSSLRN ECFSQNAEPY DIATSRYISQ SLPTDFKGVK 240 PKNGPSGYLK VKGQVENSAI TAVKRQLGRH YRLDGPPLGI EFDPLPPGAF ESSMRNPVNG 300 EVNFFLFNVP VIQIQAS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 0.0 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362312.1 | 1e-162 | PREDICTED: uncharacterized protein LOC102578174 | ||||
TrEMBL | A0A0V0IME6 | 1e-163 | A0A0V0IME6_SOLCH; Putative ovule protein | ||||
STRING | PGSC0003DMT400080267 | 1e-161 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3436 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 3e-68 | HB-other family protein |