PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02863.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 389aa    MW: 43656.9 Da    PI: 7.8223
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02863.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-091081451954
                              HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Sme2.5_02863.1_g00005.1 108 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 145
                              564459******************************88 PP
2BELL60.54e-201433072
                     BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                             +q+++ssFe+ +g gs+k+Yt+lAl++iS++FrcLkdai+ qi
  Sme2.5_02863.1_g00005.1  1 MQMIASSFEQTTGFGSSKSYTQLALHTISKQFRCLKDAISRQI 43
                             9****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075263.0E-14140IPR006563POX domain
PROSITE profilePS5007112.13186149IPR001356Homeobox domain
CDDcd000864.81E-1289150No hitNo description
SMARTSM003894.2E-1089153IPR001356Homeobox domain
SuperFamilySSF466891.67E-1790156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-2992156IPR009057Homeodomain-like
PfamPF059201.3E-18106145IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MQMIASSFEQ TTGFGSSKSY TQLALHTISK QFRCLKDAIS RQIKDTSKTL GEEENIEGKI  60
EGSKLKFVDH HLRQQRVLQQ LGMMQTNAWR PQRGLPERAV SVLRAWLFEH FLHPYPKDSD  120
KIMLAKQTGL TRSQVSNWFI NARVRLWKPM VEEMYMEEVN NKNNQEQNGL DQENIVPNNE  180
VVGSKSSVPQ EQLPICSNII QDASPKEIST STISTSPMVG GDGGGSLPTQ AAAGFSFIGS  240
LNMEKIADQR NNKKPKNDIQ NSSSSTFLSA DSEINKAGLD HTIKSEKFNT LMTPYTMEDQ  300
FGTSFNPNHQ QLTTFHQGNG HVSLTLGLPP NSDQNQHTFL PNNQTIGLGS RYNRINNPQP  360
SHHPNISYEN IDFQSGKRYA AQLLQDFVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-1695153563Homeobox protein Meis2
3k2a_B3e-1695153563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4066980.0AF406698.1 Solanum tuberosum BEL1-related homeotic protein 11 (Bel11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016547527.10.0PREDICTED: LOW QUALITY PROTEIN: BEL1-like homeodomain protein 1
TrEMBLA0A2G2VPV60.0A0A2G2VPV6_CAPBA; BEL1-like homeodomain protein 7
STRINGPGSC0003DMT4000505270.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14782467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.32e-64BEL1-like homeodomain 1