PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02843.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 883aa    MW: 101487 Da    PI: 9.9273
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02843.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.8e-08711748340
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 
                              +WT+ E++l++ + +++G+++Wk+I+r+    +t+ q+
  Sme2.5_02843.1_g00002.1 711 PWTEGEHQLFLMVLNKFGKEDWKSISRYNVISKTPTQV 748
                              7**************************97755566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF566721.45E-25314459No hitNo description
Gene3DG3DSA:3.30.420.102.0E-13447474IPR012337Ribonuclease H-like domain
SuperFamilySSF530988.35E-13506595IPR012337Ribonuclease H-like domain
PROSITE profilePS509949.917512601IPR001584Integrase, catalytic core
Gene3DG3DSA:3.30.420.102.0E-13535606IPR012337Ribonuclease H-like domain
SuperFamilySSF466895.76E-12705758IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-12709758IPR006447Myb domain, plants
PROSITE profilePS500906.249711756IPR017877Myb-like domain
CDDcd001673.66E-5711757No hitNo description
Gene3DG3DSA:1.10.10.601.0E-5711748IPR009057Homeodomain-like
PfamPF002495.6E-6711755IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MTSLHQSTRV RDFTWINPPQ FFGSKAYEDA QEFIDKLTKS GKSVRDYALK FTKLFKYAPM  60
LVADLLVRIH KFISGIPDLV VKEFCMAMLI RDMEISRLME NAEQIKGEKF KKKRGQYSNG  120
RVANDRAPLP KAQVGSKPTP PPCATLGRII RVIVRGIWVH AMGVVIRTTR FLIVLRLLRR  180
VKVKWLKEVE EAPDVLTGML NVFDFDSYDL LNLGANLSFI TPLLPIKFGL SLKILKATFL  240
VYKIFSVYTP VGESIDAHRV YRGCPISVLH KIVKSRRSSS NFRMSLFLNR RAGTPLLKDV  300
ESESPTLEMV LAMNAFSYVF LKDLPCIPPE REVEFGIDLL LGTQHISIPP YPMAPAKLKE  360
LRDLLEKGFI RPCISLWGAR VICKKERVFK PFHDSYVVVF IDDILIYSWS KREHMNHLRL  420
VLQTLRGKNL YAKFSNFEFW LAEVAFLGHV VSDDGSTKIY RDLREVYWWH GIKKDIAKFV  480
SECPNSQQVK VEHQRPSGLT QEIEIPTWKW EDVNMDFVTT FGAEDYVRAL STKVKLSTAF  540
HPQTKGQAKR TIQTLEDMLR AYVLEFKGNW DDHLPLIKFA YNNSFHTSNG MALFEVLYGS  600
RCRSPMGWFE LGEMALIGLD LGKLSPRYVG PYEIVECNRN VAYRLELPLD LGSIQVFHVS  660
MLRKLVGDPS TIVPLEGVEH HHMTEEDYSS LNGVLPQVEN SHSRHRQSGI PWTEGEHQLF  720
LMVLNKFGKE DWKSISRYNV ISKTPTQVPS NAQKYFYHRI SQTSVDCRRH SINDIQTATL  780
TPKRKTTSPP KINNNILGNN NDFHIGSSSM PFHYRNFYHF GGPTFTKNSN GNFRRYHRGE  840
ASSSNSFVME QNNNNNNNLQ RPKSPHHFLS MYLSSIEGNN PKV
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52342032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.13e-21MYB family protein