PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02819.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 1012aa    MW: 115938 Da    PI: 9.728
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02819.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.23.4e-14621351699
                              EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                       B3  16 lvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                +pk f+ ++  g++   +++  +  ++g++W vkl  ++++    l++GWk+F+++ +L++gD +vF+++g++ef   v++f++
  Sme2.5_02819.1_g00002.1  62 EKIPKGFL-KYlkGLD---HIERAILKRTGKKWLVKL--NGHR----LEDGWKKFAEELNLQVGDLLVFRHEGDMEF--EVSIFDS 135
                              4699***9.6656555...456778899*********..7777....************************999999..9999986 PP
2B345.31.6e-14303384588
                              -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                              +++++ l+ g l++pk+fa ++g++ +++++l+++de+ r W++++  + ++ ++++++G  +F  +n Lk gD ++F+++ + 
  Sme2.5_02819.1_g00002.1 303 TIRPYCLTYGFLYVPKHFACANGLIAKKKRDLIIKDETKRMWNLRI--TSGKTQVYIGDGCHKFIADNCLKKGDRIMFEVVTDG 384
                              5678999999**************999*******************..99999**************************87643 PP
3B352.77.9e-17439513583
                              -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                       B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                              +++++ l+++ l++pkkfa+e+ ++ ++   ++++    rsW++ l    +++++++++GW+eF+  n  kegD+++F+
  Sme2.5_02819.1_g00002.1 439 TIRPYCLSKHYLCIPKKFAQENRLNDRKC--VIIMRDGRRSWRFGL--FTSGKSTFIGSGWREFCLTNCFKEGDILMFE 513
                              5678999***************9986664..66666688*******..88888899**********************9 PP
4B3407.1e-13914993790
                              .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                              ++++l+   l+lp  fa+++g+  ++  +++l de+ r W++ l  +  + ++ +++GW+eF k n++++gD+  F+l++ +++
  Sme2.5_02819.1_g00002.1 914 KPYTLRVPVLYLPMAFAKSNGLLDRR--QMILVDENQRAWSMLL-GQVDKYHFGIKRGWREFTKTNDVQVGDTYKFELTN-NGT 993
                              6677777789**********888666..6***************.44444458899*********************976.444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.5E-1048136IPR003340B3 DNA binding domain
SuperFamilySSF1019361.82E-1662142IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-1062135IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-1663138IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.91464136IPR003340B3 DNA binding domain
CDDcd100179.17E-1364134No hitNo description
Gene3DG3DSA:2.40.330.106.2E-5218273IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-15298391IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-14298391IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.798299394IPR003340B3 DNA binding domain
SMARTSM010192.4E-10300394IPR003340B3 DNA binding domain
PfamPF023621.9E-12303386IPR003340B3 DNA binding domain
CDDcd100172.02E-9312379No hitNo description
Gene3DG3DSA:2.40.330.102.4E-18433521IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-17433521IPR015300DNA-binding pseudobarrel domain
CDDcd100177.54E-14434513No hitNo description
SMARTSM010198.0E-11435529IPR003340B3 DNA binding domain
PROSITE profilePS5086311.758435529IPR003340B3 DNA binding domain
PfamPF023624.9E-14439513IPR003340B3 DNA binding domain
SuperFamilySSF530986.45E-5565610IPR012337Ribonuclease H-like domain
PfamPF077273.5E-43757865IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
Gene3DG3DSA:2.40.330.106.1E-189031000IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-199041000IPR015300DNA-binding pseudobarrel domain
CDDcd100172.84E-139071001No hitNo description
PROSITE profilePS5086313.0569081002IPR003340B3 DNA binding domain
SMARTSM010194.4E-119091003IPR003340B3 DNA binding domain
PfamPF023629.6E-12914998IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1012 aa     Download sequence    Send to blast
MIGVTSMEDK MPKARLRWFE HVKRKCADEP VWRYERLAMD VYKRSRGVRP EYTLSSLDLT  60
CEKIPKGFLK YLKGLDHIER AILKRTGKKW LVKLNGHRLE DGWKKFAEEL NLQVGDLLVF  120
RHEGDMEFEV SIFDSSCCEK QYVTEGKALT PEETSEKYEF EGWFCLDPRV YRKQPLYLTC  180
GYVVVVVIAA EKLNTSIKLS GKVSYHMEAA TRKRFGCSHF VCTIQPYCLR YGILYVPKDF  240
ACANGLIANK KHDLIIKDET KRSWNLRITS EKPNTSIKSS VKASSHGKTA AHKPFGDSSF  300
VCTIRPYCLT YGFLYVPKHF ACANGLIAKK KRDLIIKDET KRMWNLRITS GKTQVYIGDG  360
CHKFIADNCL KKGDRIMFEV VTDGETPIWK FHVVTDPETL MRKFHEKPRP NIKKAGKRFS  420
NVEATYKNMQ LIHPHFICTI RPYCLSKHYL CIPKKFAQEN RLNDRKCVII MRDGRRSWRF  480
GLFTSGKSTF IGSGWREFCL TNCFKEGDIL MFEENVSVDV VCSALCSHEL RKQDKMTTKA  540
VAADETLMVR GRQLSQAKGR RGRVSKRMNR TLVEKVRCML SNAGLGRKFW AEAMTYVQHL  600
VNRLPSSAIG GKESIRDAKK TIVSRDVTFD EYAMLNKVNP EGANGTLVQV EHTPKQVEFE  660
QITVNPTSST IPDVPVTEEE LGKEEAPTQE PQQQPESIAI NRARRQTKKP ARFVHMVAYG  720
LPVVDDVPST FLEVAESSEN ERWKDAMEEE MPSLHKNKTW KLAQLPKGKK AIGCKWVFAK  780
KEGFPEKNDV RYKARLVAKG YAQKEGVDYN EVFSPVVKHS SIRILLALVA QLNLELAQLD  840
VKIVFLHGDL KEEIYMTQPE GFKVADLRGS PFLQPDIKKK NLDGERISDK DVRLTPPESQ  900
AAADANPHFI STIKPYTLRV PVLYLPMAFA KSNGLLDRRQ MILVDENQRA WSMLLGQVDK  960
YHFGIKRGWR EFTKTNDVQV GDTYKFELTN NGTIPVIHFH CKYEALGDGK GN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2159571e-100GU215957.1 Phaseolus vulgaris clone BAC PVGBa_61E16, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.15e-33B3 family protein