PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02752.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 296aa    MW: 33905.4 Da    PI: 6.3125
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02752.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.72.1e-27113173259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              dDgy+WrKYGqK++ g+ +pr+YYrCt++   gC ++k+v++s+edp v+e+tY+g H ++
  Sme2.5_02752.1_g00007.1 113 DDGYSWRKYGQKDILGAIHPRAYYRCTHRdtqGCLATKQVQKSKEDPLVFEVTYKGMHSCK 173
                              8***************************99999*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-26105174IPR003657WRKY domain
SuperFamilySSF1182903.66E-25108174IPR003657WRKY domain
SMARTSM007746.4E-39112174IPR003657WRKY domain
PROSITE profilePS5081122.584113175IPR003657WRKY domain
PfamPF031062.0E-25113173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEKVKAWDKE TLIAELTQGK EFVNRLKNQF DPLASPEECD LLLEKILSSL DKSLSILNWK  60
GFNETKDPLS SCPSIVDLGY LRDQGQNKKR KKMQQWSKQV RICGTGVDSF NHDDGYSWRK  120
YGQKDILGAI HPRAYYRCTH RDTQGCLATK QVQKSKEDPL VFEVTYKGMH SCKTSQPSIF  180
ISYENQKPNQ CQIKKQKVEK LNTIKEETGP FTPPVCQSQN TQFFANSIEP STSESMYLSL  240
FPTHEEEFEI GKLLHLSSTP TSVIDLPFYA HSDLSMDGQL GIHDPDLMID ISEYFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-18111173769OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18791KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-128HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366562.11e-159PREDICTED: probable WRKY transcription factor 30
RefseqXP_015160421.11e-159PREDICTED: probable WRKY transcription factor 30
TrEMBLM1BRE71e-157M1BRE7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000511941e-158(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.13e-33WRKY DNA-binding protein 30