PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02687.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 397aa    MW: 44869.2 Da    PI: 8.6321
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02687.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.55.7e-12264305351
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                               +GV++  k+ +W A I++      +k+++lg+ gt eeAa+++++a+ 
  Sme2.5_02687.1_g00001.1 264 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 305
                              79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.544246318IPR001471AP2/ERF domain
SMARTSM003807.6E-5263320IPR001471AP2/ERF domain
PfamPF008474.7E-6263306IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-8264308IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-6266309IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MLWSTSLLGT LCPLVTMSIL SLRTTISTLV RTIHDFVAYL ATPKASTHIL IAPTTMIFNT  60
PPTPRKDLAT ITTLGSRVRH PIIRKSLTLG NEEPFALELV ALLEATTLGT LETTIIPGAL  120
GLSTHPFSNL LSFKFLDISH EPRQFHIPYE HGIIWRAMVS IRRRKLLGLC SGRSTFLVPL  180
PKFSDNGHFG EHRFFNNKPT SVHPMPSTNI DDSKEKIAVK VVPGSSNSHA SGSLMEQTAQ  240
QFPEVKRRKR HRRKHFENQE PCLMRGVYFK NMKWQAAIKV DKKQIHLGTV GTQEEAARLY  300
DRAAFMCGRE PNFELSEEEK QELRRFKWDD FLAFTRSAIT NKKTRRSGAG ARRKSEPLTS  360
ALNSEEDEEE EEEEEGGEPE TNGFSASEDI EHDILFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2540661e-86AC254066.8 Solanum lycopersicum strain Heinz 1706 chromosome 9 clone sle-10p22 map 9, complete sequence.
GenBankHG9754481e-86HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755211e-86HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461280.11e-135PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A1S3Z9Z81e-133A0A1S3Z9Z8_TOBAC; ethylene-responsive transcription factor-like protein At4g13040
STRINGPGSC0003DMT4000450911e-134(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62462433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.18e-45ERF family protein