PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02680.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 450aa    MW: 49730.6 Da    PI: 9.9768
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02680.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-31187243360
                              -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              DgynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkve+s  d+++ ei+Y+geHnh+k
  Sme2.5_02680.1_g00006.1 187 DGYNWRKYGQKQVKGSEYPRSYYKCTHLKCPVKKKVEKSY-DGQIAEIVYRGEHNHPK 243
                              9***************************************.***************85 PP
2WRKY98.93.3e-31369426259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dg++WrKYGqK+vkgs +prsYYrCts++C+v+k ver+ +dpk+ ++tYeg+Hnhe
  Sme2.5_02680.1_g00006.1 369 EDGFRWRKYGQKVVKGSSYPRSYYRCTSPKCSVRKFVERTMDDPKAYITTYEGKHNHE 426
                              7********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28175244IPR003657WRKY domain
SuperFamilySSF1182901.09E-24184244IPR003657WRKY domain
SMARTSM007742.5E-34185243IPR003657WRKY domain
PROSITE profilePS5081123.376187244IPR003657WRKY domain
PfamPF031063.9E-24187242IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.1E-32357428IPR003657WRKY domain
SuperFamilySSF1182908.76E-28363428IPR003657WRKY domain
PROSITE profilePS5081132.34363428IPR003657WRKY domain
SMARTSM007743.6E-35368427IPR003657WRKY domain
PfamPF031064.6E-25369426IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MEVNEAAKIA IARPVASRPR CPIYKSFSEL LAGAIDISST NVHSEMVTAI RPKTVRLKPA  60
TNHALVGEPS SQVGVSEAPV GCRSDNILQS VDKPIAKLAP RKSTPLLENK GSSVSDQRQE  120
IAEANAHVQS ANEVKQQHDL KTESKRSLLA KSVQEKKTVQ STIASESTEE VPQSLINTSN  180
VDRPSYDGYN WRKYGQKQVK GSEYPRSYYK CTHLKCPVKK KVEKSYDGQI AEIVYRGEHN  240
HPKPQPPKRN LSEGHGRATL GNASKETNNP AWGNQHPQTS EGYICRIDSQ NGVRLTVHSA  300
HSSKAPCFYD PSAAAGMHPA VGNSEDATSD EPKTKRRKIK GLSNRAGTSG ESTTPYIPNQ  360
STTDSEITED GFRWRKYGQK VVKGSSYPRS YYRCTSPKCS VRKFVERTMD DPKAYITTYE  420
GKHNHEVPNR RPNSEASKTS SKSSSMKEKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-29178428177Probable WRKY transcription factor 4
2lex_A2e-29178428177Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339294.20.0PREDICTED: WRKY transcription factor 44
RefseqXP_015165027.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_015165028.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_015165029.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_015165031.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_015165033.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_015165034.10.0PREDICTED: WRKY transcription factor 44
TrEMBLM1AR980.0M1AR98_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000285300.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99512227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.16e-83WRKY family protein