PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02465.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 246aa MW: 28090.7 Da PI: 6.8625 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 119.6 | 2.9e-37 | 14 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrF+Ptdee+v +yL +k+ + +l++ ++i+e++i ++ePwdLp + e++ yfFs+++ ky+ +n a gyWk + Sme2.5_02465.1_g00006.1 14 LPPGFRFQPTDEEIVFQYLIRKTFSCPLPA-SIIPEINISNHEPWDLPGDI---EQDRYFFSNKEAKYSG---ANMASIGGYWKPS 92 79****************************.89***************554...5689*********973...5666669****** PP NAM 87 gkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128 g dk+++++ ++ +g+k+tLvfyk+ ++ ++++tdW+mheyrl Sme2.5_02465.1_g00006.1 93 GLDKQIICSkRKPIIGMKRTLVFYKEkNTCHAHRTDWIMHEYRL 136 *****9997455569*********763667889*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.12E-42 | 11 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.155 | 14 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-22 | 15 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEKFNFVKDG AIKLPPGFRF QPTDEEIVFQ YLIRKTFSCP LPASIIPEIN ISNHEPWDLP 60 GDIEQDRYFF SNKEAKYSGA NMASIGGYWK PSGLDKQIIC SKRKPIIGMK RTLVFYKEKN 120 TCHAHRTDWI MHEYRLVLPK TSSSNSHAHF KKSSQSSLVQ IGNWVLCHVF LKKRNGKCDE 180 ANYDDDNYMA NDEDNVFQIE KPIVYYDFMS DRDAASSCSS SLSINDDANE VSSSPTSLPQ 240 PTNPPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-30 | 9 | 173 | 10 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 8e-71 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006366907.1 | 1e-137 | PREDICTED: NAC domain-containing protein 83-like | ||||
Swissprot | Q9FY93 | 1e-58 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | M0ZZ06 | 1e-136 | M0ZZ06_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400011069 | 1e-136 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1387 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-60 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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