PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02464.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 425aa    MW: 47168.3 Da    PI: 5.2524
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02464.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.74.2e-25959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+i+n + rqvtfskRr g++KKAeEL +LCda++ +i+fs tgkl+eyss
  Sme2.5_02464.1_g00004.1  9 KKIDNLTARQVTFSKRRRGLFKKAEELATLCDADIGLIVFSATGKLFEYSS 59
                             68***********************************************96 PP
2K-box271.9e-1080146671
                    K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                              g++ l++++ +s ++ +a L + + +  re+R+l Ge+L+ L l eL++Le+ +e +++++ + K +
  Sme2.5_02464.1_g00004.1  80 GSEqLKSSNLQSEKKTYAMLSRDLVEKNRELRQLHGEELQGLGLDELMKLEKLVEGGISRVVKIKAR 146
                              444589999**************99999*******************************99777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.427161IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-38160IPR002100Transcription factor, MADS-box
CDDcd002655.70E-38376No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-28381IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-253859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-687150IPR002487Transcription factor, K-box
PROSITE profilePS512977.80589192IPR002487Transcription factor, K-box
Gene3DG3DSA:3.30.519.103.0E-17188246No hitNo description
SuperFamilySSF519053.81E-23195326IPR023753FAD/NAD(P)-binding domain
PRINTSPR008914.9E-14200217IPR018203GDP dissociation inhibitor
PRINTSPR008914.9E-14217233IPR018203GDP dissociation inhibitor
PfamPF009964.7E-40245327IPR018203GDP dissociation inhibitor
Gene3DG3DSA:3.30.519.102.7E-4247264No hitNo description
Gene3DG3DSA:3.50.50.602.7E-20265329IPR023753FAD/NAD(P)-binding domain
SuperFamilySSF543736.28E-10322368No hitNo description
SuperFamilySSF519053.5E-13370413IPR023753FAD/NAD(P)-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005092Molecular FunctionGDP-dissociation inhibitor activity
GO:0016491Molecular Functionoxidoreductase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MVRQKIQIKK IDNLTARQVT FSKRRRGLFK KAEELATLCD ADIGLIVFSA TGKLFEYSSS  60
SMMQLIEKHK TQSERDNMNG SEQLKSSNLQ SEKKTYAMLS RDLVEKNREL RQLHGEELQG  120
LGLDELMKLE KLVEGGISRV VKIKARLNEE GQNAIEQGHS VDSITNNRSL VNSHQDYDDS  180
DTSLKLGGND KPPEALGTSK EYNVDMIPKF AMANGTLVRV LIHTDVTKYL NFKAVDGSFV  240
YNKGKLYADS LARFQAGSPY IYPMYGLGEL PQAFARLSAV YGGTYMLNKP QCKVEFDEGG  300
KVVGVTSEGE TAKCKKVVCD PSYLPDKGKY IAFVSTEAET DDPQSELKPG IDILGTVDEI  360
FYETYDRFVP SHDSAADNCF ISQSYDSTTH FESTVMDVLD MYSKITGKVI DLSVDLSAAS  420
ATAEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6c87_A7e-4618741365443Rab GDP dissociation inhibitor alpha
6c87_B7e-4618741365443Rab GDP dissociation inhibitor alpha
6c87_C7e-4618741365443Rab GDP dissociation inhibitor alpha
6c87_D7e-4618741365443Rab GDP dissociation inhibitor alpha
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6437260.0AY643726.1 Solanum macrocarpon MSM1 (MSM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593951.11e-111PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor At5g09550
SwissprotQ9LXC01e-94GDI_ARATH; Guanosine nucleotide diphosphate dissociation inhibitor At5g09550
TrEMBLA0A2G2VAH91e-127A0A2G2VAH9_CAPBA; Guanosine nucleotide diphosphate dissociation inhibitor
STRINGXP_009593951.11e-110(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9382377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.14e-38MIKC_MADS family protein
Publications ? help Back to Top
  1. Lange BM,Ghassemian M
    Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
    Plant Mol. Biol., 2003. 51(6): p. 925-48
    [PMID:12777052]
  2. Holmes-Davis R,Tanaka CK,Vensel WH,Hurkman WJ,McCormick S
    Proteome mapping of mature pollen of Arabidopsis thaliana.
    Proteomics, 2005. 5(18): p. 4864-84
    [PMID:16247729]
  3. Ge W, et al.
    Proteomic analyses of apoplastic proteins from germinating Arabidopsis thaliana pollen.
    Biochim. Biophys. Acta, 2011. 1814(12): p. 1964-73
    [PMID:21798377]