PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02403.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family SBP
Protein Properties Length: 796aa    MW: 89482.1 Da    PI: 7.0034
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02403.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP115.62.6e-36146223178
                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                              +Cqv++Cead+se+k yh+rh+vC  +++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k++
  Sme2.5_02403.1_g00004.1 146 RCQVPDCEADISELKGYHKRHRVCLRCANASAVVLDGHSKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKAT 223
                              6*************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.8E-27143208IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.445144221IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-33145225IPR004333Transcription factor, SBP-box
PfamPF031108.9E-27147221IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MHNQPSSPSQ TGAPTQLRNA QMISSMLSGT PEDPAASSLF DWSDLLEFNL DEQLSISFDD  60
PLHQQQPPQT EPVAPVIPSS PQSQDTDVGR IRKRDPRMAC SNFLAGRIPC ACPEIDEKME  120
EEELAGIGPG KKRARTVRAS AGAGARCQVP DCEADISELK GYHKRHRVCL RCANASAVVL  180
DGHSKRYCQQ CGKFHILSDF DEGKRSCRRK LERHNNRRRR KATDLSKTSA DKECQQVTMA  240
DDVSGDDDIV KDSTCMDSQS GEKQILLESE GYVPTCSTQG IQNNHSDSFT ASGETQVDVE  300
KENYKNFHSP SYCDKSAFSS VCPTGRISFK LYDWNPAEFP RRLRHQIFQW LASMPVELEG  360
YIRPGCTILT VFVAMPTFKW GKLLEDPAAH LYEFIASPGN MLRGRGSFLI YLNNMVFRVT  420
KGGNSVVKVK LKGPAPKLKS IHPLCFEAGK PMEFFAHGSN LMQPRFRFLV SFGGRYLGND  480
NNFMPSDCKI EGDCSSMEHQ LLKIHVPRTE ADLFGPAFVE VENESGLSNF IPILIAEKDI  540
CAEMKEIQRK FCSGGSESTA VCSPCEASMS RVSEFSEFML DVAWLLREPS SENVQNLASI  600
QMQRFNYLLN ILMESQSTII LERVLSYFEN MVKRNMLAGI TDADRRLFQD ILEKKVLLKE  660
RLHLKGYFAG DPAQIMQEHS YMFGIVYWVP FAFNDTIYAL METEVPHRHN IEFGPNYWER  720
SSTVPLLDAE LASRVKGEQS GKSCGFLVRK TVLTSRTLVF VITGFAVCLG LCATFLHPRK  780
VGEFALTIRR CLFDKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A8e-46142224183squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207219RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0732960.0LC073296.1 Nicotiana tabacum NtabSPL7 mRNA for squamosa promoter binding protein NtabSPL7, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356993.10.0PREDICTED: squamosa promoter-binding-like protein 7 isoform X1
TrEMBLA0A0V0IUL00.0A0A0V0IUL0_SOLCH; Putative squamosa promoter-binding-like protein 7-like
STRINGPGSC0003DMT4000160720.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54072433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.20.0squamosa promoter binding protein-like 7