PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02281.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 332aa MW: 35907.9 Da PI: 6.8046

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02281.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.7	6.3e-34	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Sme2.5_02281.1_g00001.1 46 KQRLRWTNDLHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.746	43	103	IPR017930	Myb domain
SuperFamily	SSF46689	1.25E-17	45	100	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.0E-32	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-26	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	4.8E-9	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	3.0E-22	132	178	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MYQPKGVPGS SLAHNNAAVN SQSLDSGGSS MDPTSGGNNN ASLASKQRLR WTNDLHERFV 60 DAVAQLGGPD RATPKGVLRV MGVQGLTIYH VKSHLQKYRL AKYLPDSSSD GKASDKKEPR 120 DMLSSLDGSS GVEITTALKL QMEVQKRLHE QLEVQKQLQL RIEAQGKYLK KIIEEQQRLS 180 GVLSEVPGSG VTAPPTGDNG PESDNRTDPG TPPPSSESPH VDKPVKAHAP TTNLSMDESF 240 SSHHEPLSPD SDCQETSLME SPNGERSSKK QRVGTSAAFT KDNVALPHQI LESSLSPPYQ 300 QPHSVFMMRD QFNHTSGLSL GIEDQKVSGS NI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-23	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016556346.1	0.0	PREDICTED: protein PHR1-LIKE 1
Swissprot	Q9SJW0	1e-118	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A1U8FCD0	0.0	A0A1U8FCD0_CAPAN; protein PHR1-LIKE 1
TrEMBL	A0A2G2ZAZ5	0.0	A0A2G2ZAZ5_CAPAN; Protein PHR1-LIKE 1
STRING	PGSC0003DMT400019099	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2796	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-112	G2-like family protein