PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02107.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 615aa    MW: 66355.4 Da    PI: 6.557
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02107.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.2e-31260317260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              +DgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  d++++ei+Y+g+H+h+k
  Sme2.5_02107.1_g00005.1 260 EDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-DGQITEIVYKGSHDHPK 317
                              7****************************************.***************85 PP
2WRKY106.11.8e-33431489159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Sme2.5_02107.1_g00005.1 431 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 489
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-26250318IPR003657WRKY domain
PROSITE profilePS5081122.653254318IPR003657WRKY domain
SuperFamilySSF1182901.7E-24256318IPR003657WRKY domain
SMARTSM007749.1E-34259317IPR003657WRKY domain
PfamPF031066.1E-24260316IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-37416491IPR003657WRKY domain
SuperFamilySSF1182902.62E-29423491IPR003657WRKY domain
PROSITE profilePS5081138.825426491IPR003657WRKY domain
SMARTSM007743.1E-39431490IPR003657WRKY domain
PfamPF031063.8E-26432489IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MEDSQSQCHS HSHSHSHQYS QSSPLSSINE SSEQVKFASS DAAFSHNVSS AVGSNTGAKY  60
KLMSPAKLPI SRSSACITIP PGLSPSSFLE SPVLLSNIKA EPSPTTGSFA KFQLMQGSSG  120
SAAFSLMRSS SCGNVYGETT DEFEFKFAIG SSPTSGSLTK EAAVIAPGFN QPQSEPLIQV  180
QKRYLSQSSA PSALVESEMP NSKELSLPAP GSLDVSSIIT SAAAADNEEI NQRGQSNPSL  240
QGSHVDNKDV SSVTAERSSE DGYNWRKYGQ KLVKGSEFPR SYYKCTYPNC EVKKIFERSP  300
DGQITEIVYK GSHDHPKPQP SRRFTAGALT SIQEDRGERD ACLTGQEDKF NTDAQTSNTE  360
PSGTPLSPRQ ADDDGLEGTV SQLHSANDQM DEDDPFAKRR KMDGGMDITP VVKPIREPRV  420
VVQTVSEVDI LDDGYRWRKY GQKVVRGNPN PRSYYKCTNA GCPVRKHVER ASHDPKAVIT  480
TYEGKHNHDV PTARTNNHEM AGSVPVTGGS RVRTEENGSI SLDLGVGIGY GMENRRNGQL  540
HTLPAETVCN QVQVSSSSMM VVQPAAVAAC YNIVNGGISR FGTIENHVQG TGFETLPLQS  600
SAQCAQNYGR ILLGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-37260491877Probable WRKY transcription factor 4
2lex_A4e-37260491877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0135300.0BT013530.1 Lycopersicon esculentum clone 132248F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061640.10.0probable WRKY transcription factor 20
TrEMBLM1CX700.0M1CX70_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000766700.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-154WRKY family protein