PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02054.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Dof

Protein Properties

Length: 264aa MW: 29975.3 Da PI: 8.1261

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02054.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.3	1.7e-38	34	94	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds+ntkfCyynnyslsqPr+fCk+C+ryWt+GG+lrnvP+Gg++rknkk + Sme2.5_02054.1_g00006.1 34 QQQTLKCPRCDSSNTKFCYYNNYSLSQPRHFCKSCKRYWTRGGTLRNVPLGGASRKNKKIK 94 7899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.3E-33	36	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.77	38	92	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-24	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MLGEHDEKNM NNEKNNFMIK EKQIIQDQPE QQQQQQTLKC PRCDSSNTKF CYYNNYSLSQ 60 PRHFCKSCKR YWTRGGTLRN VPLGGASRKN KKIKKPNFVT SVTSSTNLGP NFHEPQVVVD 120 HTNPLFNYGL PTNPLDLNIQ FPRLLNFSRV SNNENLGLGF SNGFKKIQDV VITSTDSSSS 180 LPSSYPTFGS SLISSSNSNL ASFNISPSLH QQNFITNNDK FQGSNYHELN QIHEEMNYVD 240 NPFLSWACDY VDPSNLESSL PSLI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015162392.1	1e-129	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	M1AZ23	1e-128	M1AZ23_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400033382	1e-128	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	5e-35	Dof family protein